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ERX682487: Illumina MiSeq paired end sequencing
1 ILLUMINA (Illumina MiSeq) run: 429,814 spots, 208M bases, 138.9Mb downloads

Design: Whole genome sequencing of culture collection isolates.
Submitted by: CGS-GL
Study: Sequencing assembly of B. intestinalis from defined culture collection
show Abstracthide Abstract
To gain insights into the interrelationships among childhood undernutrition, the gut microbiota, and gut mucosal immune/barrier function, we purified bacterial strains targeted by immunoglobulin A (IgA) from the fecal microbiota of two cohorts of Malawian infants and children. IgA responses to several bacterial taxa, including Enterobacteriaceae, correlated with anthropometric measurements of nutritional status in longitudinal studies. The relationship between IgA responses and growth was further explained by enteropathogen burden. Gnotobiotic mouse recipients of an IgA+ bacterial consortium purified from the gut microbiota of undernourished children exhibited a diet-dependent enteropathy characterized by rapid disruption of the small intestinal and colonic epithelial barrier, weight loss, and sepsis that could be prevented by administering two IgA-targeted bacterial species from a healthy microbiota. Dissection of a culture collection of 11 IgA-targeted strains from an undernourished donor, sufficient to transmit these phenotypes, disclosed that Enterobacteriaceae interacted with other consortium members to produce enteropathy. These findings indicate that bacterial targets of IgA responses have etiologic, diagnostic, and therapeutic implications for childhood undernutrition.
Sample: 4d10B
SAMEA3217949 • ERS644949 • All experiments • All runs
Library:
Name: 4d10B
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: PAIRED
Construction protocol: Libraries prepared by sonication of genomic DNA followed by adaptor ligation, size selection then PCR amplification.
Spot descriptor:
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Runs: 1 run, 429,814 spots, 208M bases, 138.9Mb
Run# of Spots# of BasesSizePublished
ERR738804429,814208M138.9Mb2015-02-25

ID:
1278867

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