VIP-Seq of spontaneously induced prophages: P_poae_W11_2 - SRA

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SRX19959138: VIP-Seq of spontaneously induced prophages: P_poae_W11_2
1 ILLUMINA (NextSeq 500) run: 132,741 spots, 40.1M bases, 12.2Mb downloads

Design: Sequenced using the VIP-Seq protocol (described in "Activity and diversity of prophages harbored by wheat phyllosphere bacteria). Briefly, supernatants from overnight cultures of clonal bacterial cultures were DNAse-digested, Proteinase K-treated to open virions, and concentrated prior to library building.

Submitted by: University of Copenhagen

Study: Activity and diversity of prophages harbored by wheat phyllosphere bacteria

PRJNA951732 • SRP432531 • All experiments • All runs

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150 Erwinia and Pseudomonas genomes isolated from the flag leaf of wheat in Zealand, Denmark. The spontaneously active prophages of 63 of these genomes was experimentally investigated using read mapping, and 120 active prophages were discovered.

Sample: VIP-Seq of spontaneously induced prophages: P_poae_W11_2

SAMN34155270 • SRS17306833 • All experiments • All runs

Organism: Erwinia phage

Library:

Name: P_poae_W11_2_VIP-Seq_spontaneous

Instrument: NextSeq 500

Strategy: OTHER

Source: OTHER

Selection: DNase

Layout: PAIRED

Runs: 1 run, 132,741 spots, 40.1M bases, 12.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR24161101	132,741	40.1M	12.2Mb	2023-09-25

ID:: 27336071

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