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SRX21207912: RAD-seq of Eliurus ellermani : adult ear biopsy
1 ILLUMINA (Illumina HiSeq 3000) run: 2.8M spots, 827.9M bases, 264.1Mb downloads

Design: Samples were digested with SbfI enzyme before P1 adapter ligation. After adapter ligation, samples were sheared in a Covaris M220 to obtain fragments with an average size of 500 bp. Following end repair, we conducted size selection using AMPure XP beads. After 3adenylation, we ligated the P2 adapter. The libraries were finally enriched with 10 cycles of PCR. Libraries quality was verified using Fragment Analyzer and quantified using qPCR.
Submitted by: Instituto Gulbenkian de Ciencia
Study: The Genomic Diversity of the Eliurus genus in northern Madagascar with a Putative New Species
show Abstracthide Abstract
The tufted-tail rats genus (Eliurus spp.) is the most speciose genus of endemic rodents in Madagascar, with 13 described species. In the present study, we investigated Eliurus spp. genomic diversity across northern Madagascar. From the mitochondrial DNA (mtDNA) and nuclear genomic (RAD-seq) data of 124 Eliurus individuals sampled in poorly studied forests of northern Madagascar, we identified an undescribed Eliurus taxon (Eliurus sp. nova). We tested the hypothesis of a new Eliurus species using several approaches: i) DNA barcoding; ii) phylogenetic inferences; iii) species delimitation tests based on the Multi-Species Coalescent (MSC) model, iv) genealogical divergence index (gdi); v) the ad-hoc test of isolation-by-distance within versus between sister-taxa, vi) comparisons of %GC content patterns and vii) morphological analyses. All analyses support the recognition of the undescribed lineage as a distinct species.
Sample: C84_2013
SAMN36766944 • SRS18465360 • All experiments • All runs
Library:
Name: PL1_Pool1_35_C84_2013
Instrument: Illumina HiSeq 3000
Strategy: RAD-Seq
Source: GENOMIC
Selection: Restriction Digest
Layout: PAIRED
Runs: 1 run, 2.8M spots, 827.9M bases, 264.1Mb
Run# of Spots# of BasesSizePublished
SRR254755892,806,563827.9M264.1Mb2023-08-31

ID:
28644408

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