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SRX21848912: single cell 8
1 ILLUMINA (Illumina HiSeq 2000) run: 208.3M spots, 22.9G bases, 6.7Gb downloads

Design: Transcardial aCSF perfusion, brain extraction, embedding in low-melting agarose, 500mircon vibratome sectioning, microdissection of full telencephalon, single-cell dissociation, scRNA-seq; as described in Zeisel et al. 2018
Submitted by: Technion - Israel Institute of Technology
Study: scRNAseq of Bat Amygdala
show Abstracthide Abstract
Among mammals, wild bats possess several unique traits, includingextreme longevity, exceptional immunity, and the ability to adapt todifferent environments. Previous studies have shown significant functionalbehavioral activity differences between wild bats living in urban and ruralhabitats. The amygdala is a brain region involved in many innate socialbehaviors and plays a major role in regulating reward and fear responsesto those dynamic environmental inputs. However, the molecularecological imprint and the cellular building blocks of the amygdala of wildbats remains poorly understood. Herein, we performed a single-cell RNA-sequencing of the amygdala of juvenile Egyptian fruit bat (Rousettusaegyptiacus) from urban and rural origins. We identified unique molecularmarker sets of cell type profiles for excitatory and inhibitory neurons aswell as non-neuronal cells, including glial and immune cells. Differentialgene expression analysis between urban and rural bats revealed severalpreliminary candidate habitat dependent genes. Lastly, to reveal thesimilarities and differences in the amygdala of mammals, we conducted abat-mouse cross-species comparison of amygdala cell types based ontheir gene expression profile. By using the wild bat as an animal model,we can uncover the evolutionary homology and the ecological molecularsignature of brain cells in the amygdala of wild animals.
Sample:
SAMN37493775 • SRS18946163 • All experiments • All runs
Library:
Name: 10X94_2
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 208.3M spots, 22.9G bases, 6.7Gb
Run# of Spots# of BasesSizePublished
SRR26135562208,344,77122.9G6.7Gb2024-10-01

ID:
29700271

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