Illumina amplicon sequencing of metagenomic paired-end library 'Solex... - SRA

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SRX1058012: Illumina amplicon sequencing of metagenomic paired-end library 'Solexa-171955' containing sample 'SKSTL0023'
1 ILLUMINA (Illumina MiSeq) run: 54,045 spots, 18.9M bases, 12.1Mb downloads

UUID: 7aed6936-c15f-4b88-be60-73b023bd9cd2

Design: Illumina sequencing of unclassified sequences via polymerase chain reaction

Submitted by: Broad Institute (BI)

Study: Microbiome study of the RISK cohort

PRJNA237362 • SRP040765 • All experiments • All runs

show Abstracthide Abstract

Risk Stratification and Identification of Immunogenetic and Microbial Markers of Rapid Disease Progression in Children with Crohn’s Disease.

Sample: Generic sample from unclassified sequences

SAMN03771671 • SRS960434 • All experiments • All runs

Organism: unclassified sequences

Library:

Name: Solexa-171955

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Spot descriptor:

1 forward176 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: 16S

gssr_id: 356967.0

library_type: 16S

lsid: broadinstitute.org:bsp.prod.sample:4KJFW

material_type: DNA:DNA Genomic

product_order: PDO-1569

product_part_number: P-MCV-0002

project: G40596

research_project: RP-105

root_sample_id: SM-4474G

sample_id: SM-4KJFW

work_request: 36965

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-07-18 16:44:42.0	GAPipeline	RTA1.17.28	Sequencer Application 2.2.0

Runs: 1 run, 54,045 spots, 18.9M bases, 12.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR2062029	54,045	18.9M	12.1Mb	2015-06-12

ID:: 1535021

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