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ERX11597689: Illumina MiSeq paired end sequencing
1 ILLUMINA (Illumina MiSeq) run: 26,987 spots, 15.7M bases, 7.9Mb downloads

Submitted by: Foundation for Research and Innovation-HELLAS
Study: Hydrocarbon-degrading microbial consortia from the deep Eastern Mediterranean Sea
show Abstracthide Abstract
Mesopelagic water from the deep Eastern Mediterranean Sea (EMS) was collected under disrupted (REPRESS) or undisturbed (HP) pressure conditions and was acclimated to oil (OIL) or dispersed-oil (DISPOIL) under in situ pressure and temperature (10MPa, 14oC). Decompression resulted in oil-acclimatised microbial communities of lower diversity despite the restoration of in situ pressure conditions during the 1-week incubation. Further biodiversity loss was observed when oil-acclimatised communities were transferred to ONR7 medium to facilitate the isolation of oil-degrading bacteria. Microbial diversity loss impacted the degradation of recalcitrant oil compounds, especially PAHs, as low-abundance taxa, linked with PAH degradation, were outcompeted in the enrichment process. Thalassomonas, Pseudoalteromonas, Halomonas and Alcanivorax were enriched in ONR7 under all experimental conditions. No effect of dispersant application on the microbial community structure was identified. A. venustensis was isolated under all tested conditions suggesting a potential key role of this species in HC removal in the deep EMS.
Sample: HP-WAF1
SAMEA114565955 • ERS16600498 • All experiments • All runs
Library:
Name: 16S rRNA amplicon of Sample 5
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 26,987 spots, 15.7M bases, 7.9Mb
Run# of Spots# of BasesSizePublished
ERR1218682326,98715.7M7.9Mb2024-01-19

ID:
31544017

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