WGS of Streptococcus pneumoniae strain, STREP11A, expressing capsule ... - SRA

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SRX23954720: WGS of Streptococcus pneumoniae strain, STREP11A, expressing capsule type (serotype) 11A
1 ILLUMINA (Illumina NovaSeq X Plus) run: 2.2M spots, 653.6M bases, 192.5Mb downloads

Design: Illumina sequencing libraries were prepared using the tagmentation-based and PCR-based Illumina DNA Prep kit and custom IDT 10bp unique dual indices (UDI) with a target insert size of 280 bp. No additional DNA fragmentation or size selection steps were performed. Illumina sequencing was performed on an Illumina NovaSeq X Plus sequencer in one or more multiplexed shared-flow-cell runs, producing 2x151bp paired-end reads. Demultiplexing, quality control and adapter trimming was performed with bcl-convert1 (v4.2.4)

Submitted by: University of Alabama at Birmingham

Study: WGS of Streptococcus pneumoniae Multiplexed Opsonophagocytic Assay (MOPA) strains

PRJNA1088126 • SRP495306 • All experiments • All runs

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Whole Genome Sequencing of well-characterized pneumococcal strains used in the Multiplex Opsonophagocytic Assay (MOPA) to measure pneumococcal antibody function via killing of pneumococci by serum antibodies in vitro. MOPA strains are used to study the impact of pneumococcal vaccines.

Sample: WGS of Streptococcus pneumoniae Multiplexed Opsonophagocytic Assay (MOPA) strain, STREP11A, expressing capsule type (serotype) 11A

SAMN40377938 • SRS20755149 • All experiments • All runs

Organism: Streptococcus pneumoniae

Library:

Name: STREP11A_Lib

Instrument: Illumina NovaSeq X Plus

Strategy: WGS

Source: GENOMIC

Selection: RANDOM PCR

Layout: PAIRED

Runs: 1 run, 2.2M spots, 653.6M bases, 192.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR28348683	2,203,324	653.6M	192.5Mb	2024-03-14

ID:: 32260300

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