Whole Genome sequence of dengue type 4: adult patient's plasma - SRA

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SRX24762397: Whole Genome sequence of dengue type 4: adult patient's plasma
1 OXFORD_NANOPORE (GridION) run: 1,617 spots, 1.4M bases, 1.2Mb downloads

Design: RNA of dengue virus was extracted and converted to cDNA using random primer. cDNA was amplified using a PCR tiling method with 11 overlapping serotype-specific primers. PCR products were combined and sequenced using the Oxford Nanopore Technology (ONT) platform.

Submitted by: Division of Dengue Hemorrhagic Fever Research

Study: Genome sequence of dengue virus isolated from adult patients in Thailand.

PRJNA1118493 • SRP510978 • All experiments • All runs

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Sequencing of the dengue virus isolated from adult patients enrolled in a dengue clinical trial (Efficacy and Safety of Ivermectin Against Dengue Infection, Clinicaltrials.gov ID: NCT02045069). This clinical trial was conducted to evaluate the efficacy of ivermectin in adult dengue patients in Thailand.

Sample:

SAMN41611349 • SRS21481924 • All experiments • All runs

Organism: dengue virus type 4

Library:

Name: 416709

Instrument: GridION

Strategy: AMPLICON

Source: VIRAL RNA

Selection: PCR

Layout: SINGLE

Runs: 1 run, 1,617 spots, 1.4M bases, 1.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR29243873	1,617	1.4M	1.2Mb	2024-05-31

ID:: 33081739

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