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SRX25247512: GSM8385407: RPE/choroid/sclera complex, AL+PBS-2; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 38.3M spots, 11.5G bases, 3.6Gb downloads

External Id: GSM8385407_r1
Submitted by: Jiangsu Key Laboratory of Brain Disease Bioinformation, Life science, xuzhou medical university
Study: Intermittent fasting alleviates photoreceptor degeneration and retina inflammation in oxidative stress-induced model of Age-Related Macular Degeneration
show Abstracthide Abstract
Age-related macular degeneration (AMD), a prevalent neurodegenerative disorder, remains the leading cause of vision loss among the elderly population. Despite the urgent need, effective treatments or preventive strategies for AMD are not available. Recent studies have highlighted the potential neuroprotective benefits of intermittent fasting (IF) in several models of aging and age-associated disorders. However, its efficacy in AMD has not been established. Our current research reveals that IF alleviated neurodegeneration by reducing RPE and photoreceptor cell damage in an oxidative stress-induced mouse model of AMD. The assessment of visual capabilities in mice through optomotor response (OMR) tests indicates that IF markedly preserved visual function in NaIO3-treated mice. To understand the mechanism by which IF exerts its protective effects, we performed transcriptome analyses and found that IF can counteract numerous transcriptional alterations induced by NaIO3, predominantly affecting genes involved in photoreceptor structure, inflammatory pathways and reactive oxygen species (ROS) process. Further, we demonstrated through multiple experiments that IF could effectively reduce ROS levels and restraining the hyperactivation of microglia and Müller cells within the RPE and retina. Moreover, we explored the initiation of IF at a later stage in an individual's lifespan and found that benefits were also obtained in the AMD model. Collectively, this study indicates IF exerts neuroprotective effects by reducing ROS production and inflammation in the retina, and is expected to become a new strategy for retinal degenerative diseases caused by oxidative damage, incluiding AMD. Overall design: We examined the transcriptional profiles of IF-treated degenerative retina to explore the underlying mechanism. RNA was isolated from the RPE/choroid/sclera complex, which was either subjected to PBS or NaIO3 induction, with and without IF intervention, and subjected to RNA-seq analysis
Sample: RPE/choroid/sclera complex, AL+PBS-2
SAMN42380696 • SRS21933353 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM8385407
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from eye cup utilizing the Trizol/chloroform method according to standard RNA extraction procedure. RNA libraries for RNA-seq was prepared using TIANSeq Stranded RNA-Seq Kit (Illumina), follwing manufacturers' protocol Illumina HiSeq PE150
Runs: 1 run, 38.3M spots, 11.5G bases, 3.6Gb
Run# of Spots# of BasesSizePublished
SRR2974652438,259,13211.5G3.6Gb2024-07-10

ID:
33589258

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