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SRX2037283: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Typhimurium by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 983,715 spots, 456.4M bases, 260.5Mb downloads

External Id: EXT00210257
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Washington State University
PRJNA336192 • SRP082492 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Salmonella as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.
Sample:
SAMN05505503 • SRS1631041 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Typhimurium
Library:
Name: Salmonella enterica subsp. enterica serovar Typhimurium Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Typhimurium.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 983,715 spots, 456.4M bases, 260.5Mb
Run# of Spots# of BasesSizePublished
SRR4046385983,715456.4M260.5Mb2016-08-22

ID:
2946503

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