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SRX4369949: GSM3262107: hyphae_24 hrs_DMSO rep 1; Aspergillus nidulans FGSC A4; ssRNA-seq
1 ILLUMINA (Illumina HiSeq 2500) run: 22.1M spots, 2.2G bases, 687.6Mb downloads

Submitted by: NCBI (GEO)
Study: Cytochrome P450 Monooxygenase Mediated Metabolic Utilization of Benzo(a)pyrene by Fungi
show Abstracthide Abstract
Soil dwelling Aspergillus fungi possess the versatile metabolic capability to utilize complex organic compounds which are toxic to humans, yet the mechanisms they employ remain largely unknown. Benzo(a)pyrene is a common carcinogenic contaminant, posing a significant concern for human health. Here, we report that Aspergillus fungi can degrade benzo(a)pyrene effectively. In Aspergillus nidulans, exposure to benzo(a)pyrene results in transcriptomic and metabolic changes associated with cellular growth and energy generation, implying that the fungus utilizes benzo(a)pyrene as a food. Importantly, we identify and characterize the conserved bapA gene encoding a cytochrome P450 monooxygenase that exerts the first step in the degradation of benzo(a)pyrene. We further demonstrate that the fungal NF-?B-type global regulators VeA and VelB are required for benzo(a)pyrene degradation in A. nidulans, which occurs through expression control of bapA in response to nutrient limitation. Our study illuminates fundamental knowledge of fungal benzo(a)pyrene metabolism and provides novel insights into enhancing bioremediation potential. Overall design: Aspergillus nidulans hyphae were incubated in 0.1% glucose media with 200 µM benzo(a)pyrene or solvent only control (DMSO) and samples were taken at 6, 24, and 48 hours post incubation. Timepoint zero represents spore inoculation in 1% glucose media and growth for 18 hours. Transcripts were sequenced using Illumina HiSeq2500
Sample: hyphae_24 hrs_DMSO rep 1
SAMN09632232 • SRS3528311 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Hyphae samples were collected, squeezed dried and flash frozen in liquid nitrogen. Total RNA was extracted using Trizol, silica/zirconia beads in a minibeadbeater, and precipitation with isopropanol. mRNA was extracted from total RNA using polyA selection, followed by RNA fragmentation Strand specific library was constructed by first-strand cDNA synthesis using random primers, followed by sample cleanup and the second-strand synthesis using DNA Polymerase I and RNase H. A single 'A' base was added to the cDNA fragments followed by ligation of the adapters. Final cDNA library was obtained by further purification and enrichment with PCR, and the quality was checked using Bioanalyzer 2100
Experiment attributes:
GEO Accession: GSM3262107
Links:
Runs: 1 run, 22.1M spots, 2.2G bases, 687.6Mb
Run# of Spots# of BasesSizePublished
SRR750052622,133,1192.2G687.6Mb2018-07-11

ID:
5934867

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