Illumina amplicon sequencing of metagenomic paired-end library 'Solex... - SRA

SRX1058008: Illumina amplicon sequencing of metagenomic paired-end library 'Solexa-172025' containing sample 'SKSTL0142'
1 ILLUMINA (Illumina MiSeq) run: 163,094 spots, 57.1M bases, 36.2Mb downloads

UUID: a0886449-e8b1-4296-9a2a-9005db743799

Design: Illumina sequencing of unclassified sequences via polymerase chain reaction

Submitted by: Broad Institute (BI)

Study: Microbiome study of the RISK cohort

PRJNA237362 • SRP040765 • All experiments • All runs

show Abstracthide Abstract

Risk Stratification and Identification of Immunogenetic and Microbial Markers of Rapid Disease Progression in Children with Crohn’s Disease.

Sample: Generic sample from unclassified sequences

SAMN03771669 • SRS960432 • All experiments • All runs

Organism: unclassified sequences

Library:

Name: Solexa-172025

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Spot descriptor:

1 forward176 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: 16S

gssr_id: 357037.0

library_type: 16S

lsid: broadinstitute.org:bsp.prod.sample:4KJHW

material_type: DNA:DNA Genomic

product_order: PDO-1569

product_part_number: P-MCV-0002

project: G40714

research_project: RP-105

root_sample_id: SM-4477U

sample_id: SM-4KJHW

work_request: 36966

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-07-18 16:44:42.0	GAPipeline	RTA1.17.28	Sequencer Application 2.2.0

Runs: 1 run, 163,094 spots, 57.1M bases, 36.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR2062025	163,094	57.1M	36.2Mb	2015-06-12

ID:: 1535017

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