U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX2360824: Recovery of uncultivated bacterial and archaeal genomes substantially flesh out the tree of life: Sample Methanosarcina sp. UBA342
1 ILLUMINA (Illumina HiSeq 2000) run: 1.1M spots, 205.3M bases, 105Mb downloads

Design: Genome coverage :53.44 Assembly method and version: CLC de novo assembler4.4.1 Mapping method and version: BWA (BWA-MEM)0.7.12-r1039
Submitted by: University of Queensland
Study: Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substantially flesh out the tree of life
show Abstracthide Abstract
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing throughput and computational techniques that allow for the cultivation-independent recovery of high-quality bacterial and archaeal genomes directly from metagenomic data. In this study, we recovered 7,903 uncultivated genomes from >1,000 metagenomes available from the Sequence Read Archive. These genomes increase the phylogenetic diversity of current archaeal and bacterial genome trees by >30%.
Sample: Uncultivated Methanosarcina sp. UBA342 genome recovered from SRX691278
SAMN06027438 • SRS1809202 • All experiments • All runs
Library:
Name: SRX691278.b13
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Experiment attributes:
alignment_software: BWA (BWA-MEM)
Runs: 1 run, 1.1M spots, 205.3M bases, 105Mb
Run# of Spots# of BasesSizePublished
SRR50366861,074,895205.3M105Mb2017-09-14

ID:
3444027

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...