5XMJ: Crystal structure of quinol:fumarate reductase from Desulfovibrio gigas

PDB ID: 5XMJDownload
MMDB ID: 162921
PDB Deposition Date: 2017/5/15
Updated in MMDB: 2018/12
Experimental Method:
x-ray diffraction
Resolution: 3.6  Å
Source Organism:
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364▼
Similar Structures:
Biological Unit for 5XMJ: hexameric; determined by author and by software (PISA)
Molecular Components in 5XMJ
Label Count Molecule
Proteins (6 molecules)
2
Fumarate Reductase Flavoprotein Subunit
Molecule annotation
2
Succinate Dehydrogenase Iron-sulfur Subunit
Molecule annotation
2
Fumarate Reductase Respiratory Complex
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
2
FLAVIN-ADENINE DINUCLEOTIDEFLAVIN-ADENINE DINUCLEOTIDE
2
2
FUMARIC ACIDFUMARIC ACID
3
2
FE3-S4 CLUSTERFE3-S4 CLUSTER
4
2
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
5
2
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
6
4
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
7
2
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
8
1
MENAQUINONE-7MENAQUINONE-7
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303