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8V6J:
DNA elongation complex (configuration 2) of Xenopus laevis DNA polymerase alpha-primase
PDB ID:
8V6J
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MMDB ID:
240322
PDB Deposition Date:
2023/12/1
Updated in MMDB:
2023/12
Experimental Method:
electron microscopy
Resolution:
11.11 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
E
Xenopus laevis
A, B, C, D
Similar Structures:
VAST+
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Biological Unit for 8V6J: hexameric; determined by author
Molecular Components in 8V6J
Label
Count
Molecule
Proteins (4 molecules)
A
1
DNA Polymerase Alpha Catalytic Subunit
B
1
DNA Polymerase Alpha Subunit B
C
1
DNA Primase Large Subunit
D
1
DNA Primase
Nucleotide(1 molecule)
E
1
DNA Template
Chemicals and Non-standard biopolymers (8 molecules)
F
1
RNA-DNA primer
1
3
ZINC ION
2
1
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
3
2
MAGNESIUM ION
4
1
IRON/SULFUR CLUSTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303