2JA5: CPD lesion containing RNA Polymerase II elongation complex A

PDB ID: 2JA5Download
MMDB ID: 149426
PDB Deposition Date: 2006/11/23
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 3.8  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 2JA5: 14-meric; determined by author and by software (PQS)
Molecular Components in 2JA5
Label Count Molecule
Proteins (12 molecules)
1
DNA-directed RNA Polymerase II Subunit Rpb1
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb2
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb3
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb4
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb7
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb9
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb11
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
Molecule annotation
Nucleotides(2 molecules)
1
5'-r(*up*up*cp*gp*ap*cp*cp*ap*gp*gp*ap)-3'
Molecule annotation
1
5'-d(*ap*gp*cp*tp*cp*ap*ap*gp*tp*ap *cp*tp*ttp*tp*tp*cp*cp*brup*gp*gp*tp*cp*ap*tp*t)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
8
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303