8V4Y: Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 1)

PDB ID: 8V4YDownload
MMDB ID: 244392
PDB Deposition Date: 2023/11/29
Updated in MMDB: 2024/03
Experimental Method:
electron microscopy
Resolution: 2.8  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8V4Y: undecameric; determined by author
Molecular Components in 8V4Y
Label Count Molecule
Proteins (9 molecules)
2
Histone H3.2
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A Type 1
Molecule annotation
2
Histone H2B
Molecule annotation
1
Swi/snf-related Matrix-associated Actin-dependent Regulator of Chromatin Subfamily a Member 5
Molecule annotation
Nucleotides(2 molecules)
1
Widom 601 DNA (147-mer) With 60 Base Pairs Flanking DNA (Reverse Strand)
Molecule annotation
1
Widom 601 DNA (147-mer) With 60 Base Pairs Flanking DNA (Forward Strand)
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
2
1
MAGNESIUM IONMAGNESIUM ION
3
1
BERYLLIUM TRIFLUORIDE IONBERYLLIUM TRIFLUORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303