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Genome Information for Microtus pennsylvanicus
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The meadow vole (Microtus pennsylvanicus) is a North American vole found in eastern Canada and the United States. Its range extends farther south along the Atlantic coast (from Wikipedia entry). This sample of a male individual found in Ithaca, New York, was procured by Lindsay Sailer and David Ramirez, and coordinated by Lauren O'Connell and Jessica Nowicki to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Oliver Fedrigo, Giulio Formenti, and Jennifer Balacco.
| Accession | PRJNA1082380 |
| Type | Umbrella project |
| Organism | Microtus pennsylvanicus[Taxonomy ID: 10058] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus; Microtus pennsylvanicus |
| Submission | Registration date: 29-Feb-2024
Vertebrate Genomes Project |
| Relevance | Reference Genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 49 |
| WGS master | 2 |
| SRA Experiments | 13 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total |
2
1
3
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1074849 | Chromosomes | Microtus pennsylvanicus | Microtus pennsylvanicus (meadow vole) genome, mMicPen1, haplotype 1 (Vertebrate Genomes Project) | | PRJNA1074850 | Chromosomes | Microtus pennsylvanicus | Microtus pennsylvanicus (meadow vole) genome, mMicPen1, haplotype 2 (Vertebrate Genomes Project) | | PRJNA1123830 | SRA or Trace | Microtus pennsylvanicus (meadow vole) genome, mMicPen1, sequence data | Microtus pennsylvanicus (meadow vole) genome, mMicPen1, sequence data (Vertebrate Genomes Project) |
|