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Genome Information for Sylvia atricapilla
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European blackcaps show large variability in migratory phenotypes (and little else), including propensity to migrate, distance and direction. Blackcaps are a perfect system to study the genetics of migration. This sample (Permit# AZ 3104-4/021/0033, Funding : Max Planck Society, Grant ID : MPRG grant to ML) was collected within the core line of research in the Miriam Liedvogel Lab, MPI Evolutionary Biology, studying the genomic architecture of migratory traits, and used to generate chromosomal reference assembly as part of the G10K-VGP Project and the B10K Project.
| Accession | PRJNA560235 |
| Type | Umbrella project |
| Organism | Sylvia atricapilla[Taxonomy ID: 48155] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Sylviidae; Sylviinae; Sylvia; Sylvia atricapilla |
| Submission | Registration date: 14-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 31858 |
| WGS master | 2 |
| Transcript | 31597 |
| SRA Experiments | 15 |
| Protein Sequences | 28404 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
Sylvia atricapilla encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA558064 | Chromosomes | Sylvia atricapilla | Sylvia atricapilla (European blackcap) genome, bSylAtr1, primary haplotype (Vertebrate Genomes Project) | | PRJNA558065 | Scaffolds | Sylvia atricapilla | Sylvia atricapilla (European blackcap) genome, bSylAtr1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA1125396 | Chromosomes | Sylvia atricapilla | Sylvia atricapilla (European blackcap) genome, bSylAtr1, primary haplotype (NCBI) | | PRJNA1005979 | SRA or Trace | Sylvia atricapilla (European blackcap) genome, bSylAtr1, sequence data. | Sylvia atricapilla (European blackcap) genome, bSylAtr1, sequence data. (G10K) |
|