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Accession: PRJNA489244 ID: 489244

Birds

B10K Reference Genome Project

Reference genomes for all > 10,000 bird species. This umbrella BioProject ID collects all assemblies of bird genomes that reach the VGP metric (PRJNA489243), but grouped under B10K page, and that are publicly available to the community. The aspired metric minimum to be included in this list as of February 2017 are assemblies that have a contig N50 > 1Mb, scaffold N50 > 10Mb, 90% of the assembly assigned to scaffolds that represent chromosomes, base call accuracy of QV40 or greater, and haplotype phased as much as possible.
AccessionPRJNA489244
TypeUmbrella Comparative genomics project (Subtype:Comparative genomics)
SubmissionRegistration date: 4-Sep-2018
B10K
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1113529
WGS master102
Genomic DNA100
Transcript1104661
SRA Experiments950
Protein Sequences956942
Publications
PubMed23
PMC15
Other datasets
BioSample98
Assembly102
SRA Data Details
ParameterValue
Data volume, Gbases16,398
Data volume, Tbytes5.78
Birds encompasses the following 50 sub-projects:
Project TypeNumber of Projects
Umbrella project50
BioProject
accession
OrganismTitle
PRJNA562166Acanthisitta chlorisAcanthisitta chloris (Rifleman) genome, bAcaChl1 (Vertebrate Genomes Project)
PRJNA922139Acridotheres tristisAcridotheres tristis (common myna) genome, bArcTri1 (Vertebrate Genomes Project)
PRJNA566188Alca tordaAlca torda (Razorbill) genome assembly (G10K)
PRJNA922976Ammospiza caudacutaAmmodramus caudacutus (saltmarsh sparrow) genome, bAmmCau1 (Vertebrate Genomes Project)
PRJNA641113Anas platyrhynchosAnas platyrhynchos domestica (Pekin duck) bAnaPla1 (Zhejiang University)
List all 50 'Umbrella project' projects...

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