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Genome Information for Aythya fuligula
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The tufted duck (Aythya fuligula) is a common, migratory diving duck of Eurasia. This assembly has been produced as part of the G10K-VGP and B10K projects. Sequencing was conducted with Pacific long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by the Olivier Fedrigo and Marcela Uliano-Silva, and supervised by Arang Rhie, using the VGP 1.5 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate just as contigs. Genome coordination and funding was done by Robert Kraus. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562180 |
| Type | Umbrella project |
| Organism | Aythya fuligula[Taxonomy ID: 219594] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya; Aythya fuligula |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 29670 |
| WGS master | 2 |
| Transcript | 29492 |
| SRA Experiments | 35 |
| Protein Sequences | 27748 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 10 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total |
2
1
3
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJNA561952 | Chromosomes | Aythya fuligula | Aythya fuligula (Tufted Duck) genome, bAytFul2, primary haplotype (Vertebrate Genomes Project) | | PRJNA561953 | Scaffolds | Aythya fuligula | Aythya fuligula (Tufted Duck) genome, bAytFul2, alternate haplotype (Vertebrate Genomes Project) | | PRJNA602521 | Chromosomes | Aythya fuligula | Aythya fuligula isolate:bAytFul2 RefSeq Genome sequencing and assembly (NCBI) |
|