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Genome Information for Cygnus olor
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The mute swan (Cygnus olor) is found in Eurasia and was introduced the Americas. It is note mute, but just vocalizes less than other swans. This assembly has been produced as part of the G10K-VGP and B10K projects. Sequencing was conducted with Pacific long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by the Olivier Fedrigo, and supervised by Arang Rhie, using the VGP 1.5 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Genome coordination and funding was done by Robert Krause. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562205 |
| Type | Umbrella project |
| Organism | Cygnus olor[Taxonomy ID: 8869] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus; Cygnus olor |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 59756 |
| WGS master | 2 |
| Transcript | 59511 |
| SRA Experiments | 16 |
| Protein Sequences | 47781 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA561960 | Chromosomes | Cygnus olor | Cygnus olor (Mute swan) genome, bCygOlo1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561961 | Scaffolds | Cygnus olor | Cygnus olor (Mute swan) genome, bCygOlo1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA642912 | Chromosomes | Cygnus olor | Cygnus olor isolate:bCygOlo1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008085 | SRA or Trace | Cygnus olor (Mute swan) genome, bCygOlo1, sequence data. | Cygnus olor (Mute swan) genome, bCygOlo1, sequence data. (G10K) |
|