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Genome Information for Phoenicopterus ruber
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The American Flamingo is found throughout the Caribbean and is a non-migratory bird. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing at NovaGene. Genome assembly was conducted by the Olivier Fedrigo and Bettina Haase, and supervised by Arang Rhie, using the VGP 1.5 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate just as contigs. Funding was raised by Tom Gilbert and Erich Jarvis from B10K contributors and HHMI. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562231 |
| Type | Umbrella project |
| Organism | Phoenicopterus ruber ruber[Taxonomy ID: 9218] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Mirandornithes; Phoenicopteriformes; Phoenicopteridae; Phoenicopterus; Phoenicopterus ruber; Phoenicopterus ruber ruber |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 35 |
| WGS master | 2 |
| SRA Experiments | 18 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs SRA or Trace Total |
1
1
1
3
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA561888 | Chromosomes | Phoenicopterus ruber ruber | Phoenicopterus ruber ruber (American Flamingo) genome, bPhoRub1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561889 | Contigs | Phoenicopterus ruber ruber | Phoenicopterus ruber ruber (American Flamingo) genome, bPhoRub1, alternate haplotype (G10K) | | PRJNA1007622 | SRA or Trace | Phoenicopterus ruber ruber (American Flamingo) genome, bPhoRub1, sequence data. | Phoenicopterus ruber ruber (American Flamingo) genome, bPhoRub1, sequence data. (G10K) |
|