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Genome Information for Sylvia borin
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The garden warbler (Sylvia borin) is a songbird, and one of the most well studied for migratory behavior between its breeding grounds in Europe to its wintering grounds in central Africa. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by Calvinna Caswara, and supervised by Arang Rhie, using the VGP 1.5 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Funding was raised by Steve Smith, Silvia Fuselli, and Leonida Fusani. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562244 |
| Type | Umbrella project |
| Organism | Sylvia borin[Taxonomy ID: 73324] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Sylviidae; Sylviinae; Sylvia; Sylvia borin |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 39 |
| WGS master | 2 |
| SRA Experiments | 11 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs SRA or Trace Total |
1
1
1
3
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA561945 | Chromosomes | Sylvia borin | Sylvia borin (Garden warbler) genome, bSylBor1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561946 | Contigs | Sylvia borin | Sylvia borin (Garden warbler) genome, bSylBor1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA1005978 | SRA or Trace | Sylvia borin (Garden warbler) genome, bSylBor1, sequence data. | Sylvia borin (Garden warbler) genome, bSylBor1, sequence data. (G10K) |
|