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The saltmarsh sparrow (Ammospiza caudacuta) is a small sparrow found in salt marshes along the Atlantic coast of the United States. This sample is from a female captured and released on a marsh in Barn Island Wildlife Management Area in Connecticut, USA. This sample was procured by Chris Elphick and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). The project was coordinated by Adrienne Kovach and Lindsey Fenderson of the University of New Hampshire. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
Accession | PRJNA922976 |
Type | Umbrella project |
Organism | Ammospiza caudacuta[Taxonomy ID: 2857398] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Ammospiza; Ammospiza caudacuta |
Submission | Registration date: 11-Jan-2023 Vertebrate Genomes Project |
Relevance | Model Organism |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (total) | 27893 |
WGS master | 2 |
Genomic DNA | 1 |
Transcript | 27528 |
Protein Sequences | 25890 |
Publications |
PubMed | 1 |
PMC | 1 |
Other datasets |
BioSample | 2 |
Assembly | 2 |
This project encompasses the following 3 sub-projects:
Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs Total | 2 1 3
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BioProject accession | Assembly level | Organism | Title |
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PRJNA839452 | Chromosomes | Ammospiza caudacuta | Ammospiza caudacuta (saltmarsh sparrow) genome, bAmmCau1, primary haplotype (Vertebrate Genomes Project) | PRJNA839451 | Contigs | Ammospiza caudacuta | Ammospiza caudacuta (saltmarsh sparrow) genome, bAmmCau1, alternate haplotype (Vertebrate Genomes Project) | PRJNA994575 | Chromosomes | Ammospiza caudacuta | Ammospiza caudacuta isolate:bAmmCau1 RefSeq Genome sequencing and assembly (NCBI) |
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