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Accession: PRJNA922976 ID: 922976

Ammodramus caudacutus (saltmarsh sparrow) genome, bAmmCau1

The saltmarsh sparrow (Ammospiza caudacuta) is a small sparrow found in salt marshes along the Atlantic coast of the United States. This sample is from a female captured and released on a marsh in Barn Island Wildlife Management Area in Connecticut, USA. This sample was procured by Chris Elphick and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). The project was coordinated by Adrienne Kovach and Lindsey Fenderson of the University of New Hampshire. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
AccessionPRJNA922976
TypeUmbrella project
OrganismAmmospiza caudacuta[Taxonomy ID: 2857398]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Ammospiza; Ammospiza caudacuta
SubmissionRegistration date: 11-Jan-2023
Vertebrate Genomes Project
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)27893
WGS master2
Genomic DNA1
Transcript27528
Protein Sequences25890
Publications
PubMed1
PMC1
Other datasets
BioSample2
Assembly2
This project encompasses the following 3 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Contigs
Total

2
1
3
BioProject
accession
Assembly
level
OrganismTitle
PRJNA839452 ChromosomesAmmospiza caudacutaAmmospiza caudacuta (saltmarsh sparrow) genome, bAmmCau1, primary haplotype (Vertebrate Genomes Project)
PRJNA839451 ContigsAmmospiza caudacutaAmmospiza caudacuta (saltmarsh sparrow) genome, bAmmCau1, alternate haplotype (Vertebrate Genomes Project)
PRJNA994575 ChromosomesAmmospiza caudacutaAmmospiza caudacuta isolate:bAmmCau1 RefSeq Genome sequencing and assembly (NCBI)

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