Table 1.

Molecular Genetic Testing Used in NDP-Related Retinopathies

Gene 1MethodProportion of Probands with a Pathogenic Variant 2 Detectable by Method
NDP Sequence analysis 3~80% 4, 5
Gene-targeted deletion/duplication analysis 6~20% 4
1.

See Table A. Genes and Databases for chromosome locus and protein.

2.

See Molecular Genetics for information on variants detected in this gene.

3.

Sequence analysis detects variants that are benign, likely benign, of uncertain significance, likely pathogenic, or pathogenic. Variants may include small intragenic deletions/insertions and missense, nonsense, and splice site variants; typically, exon or whole-gene deletions/duplications are not detected. For issues to consider in interpretation of sequence analysis results, click here.

4.
5.

A noncoding variant in an untranslated region outside of the exon and splice junction regions typically included in standard sequencing has been observed in NDP [Daich Varela et al 2023].

6.

Gene-targeted deletion/duplication analysis detects intragenic deletions or duplications. Methods used may include a range of techniques such as quantitative PCR, long-range PCR, multiplex ligation-dependent probe amplification (MLPA), and a gene-targeted microarray designed to detect single-exon deletions or duplications.

From: NDP-Related Retinopathies

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