(txid93934[Organism]) AND gds_sra[filter] - GEO DataSets

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Select item 2002709391.

Molecular regulation of photoinduced seasonal changes in Japanese Quail (Coturnix japonica) energy rheostasis.

(Submitter supplied) The neuroendocrine regulation of seasonal energy homeostasis and rheostasis are widely studied. However, the molecular pathways underlying tissue-specific adaptations remain poorly described. We conducted an experiment to examine long-term rheostatic changes in energy stability using the well-characterized photoperiodic response of the Japanese quail. We exposed quails to photoperiodic transitions simulating the annual photic cycle and examined the morphology and fat deposition in liver, and white adipose tissue. more...

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34652
24 Samples

Download data: CSV

Series

Accession:: GSE270939

ID:: 200270939

Select item 2002397762.

EcoToxChip 2016 LSARP RNASeq database

(Submitter supplied) As part of the EcoToxChip project, 49 distinct exposure studies were conducted on three lab model species (Japanese quail, fathead minnow, African clawed frog) and three ecologically relevant species (double crested cormorant, rainbow trout, northern leopard frog), at multiple life stages (embryo, adult), exposed to eight chemicals of environmental concern (ethinyl estradiol-EE2, hexabromocyclododecane-HBCD, lead-Pb, selenomethionine-SeMe, 17β trenbolone-TB, chlorpyrifos-CPF, fluoxetine-FLX, and benzo [a] pyrene-BaP. more...

Organism:: Lithobates pipiens; Phalacrocorax auritus; Pimephales promelas; Oncorhynchus mykiss; Xenopus laevis; Coturnix japonica

Type:: Expression profiling by high throughput sequencing

9 related Platforms
724 Samples

Download data: TXT

Series

Accession:: GSE239776

ID:: 200239776

PubMed Similar studies

Select item 2002417743.

FSHβ links photoperiodic signalling in the pituitary gland to seasonal reproduction in Japanese quail.

(Submitter supplied) Annual cycles in daylength provide an initial predictive environmental cue that plants and animals use to time seasonal biology. Seasonal changes in photoperiodic information acts to entrain endogenous programs in physiology to optimize an animal’s fitness. Attempts to identify the neural and molecular substrates of photoperiodic time measurement in birds have, to date, focussed on blunt changes in light exposure during a restricted period of photoinducibility. more...

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34121
54 Samples

Download data: CSV

Series

Accession:: GSE241774

ID:: 200241774

Select item 2002417724.

FSHβ links photoperiodic signalling in the mediobasal hypothalamus to seasonal reproduction in Japanese quail.

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34121
54 Samples

Download data: CSV

Series

Accession:: GSE241772

ID:: 200241772

Select item 2002132535.

Dosage compensation of Z sex chromosome genes in avian fibroblast cells

(Submitter supplied) Sex in birds is genetically determined, molecular mechanism of which is not well-understood. Their Z sex chromosome (chrZ) lacks whole chromosome inactivation as known for mammalian chrX. To investigate the extent of chrZ dosage compensation and its role in somatic cell’s sex specification, we used a highly-quantitative method and analyzed transcriptional activities of male and female fibroblasts from seven birds. more...

Organism:: Dromaius novaehollandiae; Pavo cristatus; Taeniopygia guttata; Anas platyrhynchos; Meleagris gallopavo; Coturnix japonica; Gallus gallus

Type:: Expression profiling by high throughput sequencing

7 related Platforms
54 Samples

Download data: XLSX

Series

Accession:: GSE213253

ID:: 200213253

PubMed Full text in PMC Similar studies

Select item 2001672036.

Sex differences and effect of testosterone on the transcriptome in brain regions underlying quail sexual behavior

(Submitter supplied) To understand the sex differences in brain function that underlie sex differences in behavior we measured the transcriptome of POM, VMN and TnA of adult quail of both sexes either left gonadally intact or gonadectomized and treated with testosterone. Gonadectomy and testosterone-treated groups allowed us to distinguish a suite of genes whose expression is sensitive to testosterone and a suite of genes that are not, the magnitude and pattern of which differs by sex and nucleus.

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL25495
36 Samples

Download data: FA, TXT

Series

Accession:: GSE167203

ID:: 200167203

SRA Run Selector

Select item 2002273347.

Gene expression and identification of japanese quail embryonic forebrain cells.

(Submitter supplied) We used single cell RNAseq to identify the populations and identity of cells present in the japanese quail forebrain during its embryonic stages.

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33247
1 Sample

Download data: CSV, MTX, TSV

Series

Accession:: GSE227334

ID:: 200227334

PubMed Full text in PMC Similar studies

Select item 2001740948.

Blood transcripts from female Japanese quail given LPS injection or saline

(Submitter supplied) The aim of this experiment was to test how female Japanese quail respond to being housed with sick (LPS treated) relative to control males. LPS injected females were also tested.

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29461
29 Samples

Download data: TXT

Series

Accession:: GSE174094

ID:: 200174094

PubMed Similar studies SRA Run Selector

Select item 2002003959.

Hepatic Transcriptomic Responses to Ethinylestradiol in Two Life Stages of Japanese Quail [embryonic day 9 RNA-seq]

(Submitter supplied) Chemical risk assessment for avian species typically depends on information from toxicity tests performed in adult birds. Early-life stage (ELS) toxicity tests have been proposed as an attractive alternative, but incorporation of these data into existing frameworks will require knowledge about the similarities/differences between ELS and adult responses. The present study uses transcriptomics to assess hepatic gene expression in ELS and adult Japanese quail following exposure to ethinylestradiol (EE2). more...

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29437
15 Samples

Download data: TXT

Series

Accession:: GSE200395

ID:: 200200395

PubMed Similar studies

Select item 20020039410.

Hepatic Transcriptomic Responses to Ethinylestradiol in Two Life Stages of Japanese Quail [12-week old RNA-seq]

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29461
16 Samples

Download data: TXT

Series

Accession:: GSE200394

ID:: 200200394

PubMed Similar studies

Select item 20016237811.

Neurotranscriptomic changes associated with chick-directed parental care in adult non-reproductive Japanese quail

(Submitter supplied) For many species, parental care critically affects offspring survival. But what drives animals to display parental behaviours towards young? In mammals, pregnancy‐induced physiological transformations seem key in preparing the neural circuits that lead towards attraction (and reduced‐aggression) to young. Beyond mammalian maternal behaviour, knowledge of the neural mechanisms that underlie young‐directed parental care is severely lacking. more...

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29461
144 Samples

Download data: TXT

Series

Accession:: GSE162378

ID:: 200162378

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20017977012.

Using transcriptomics and metabolomics to understand species differences in sensitivity to chlorpyrifos in Japanese quail and double-crested cormorant embryos

(Submitter supplied) Modern 21st century toxicity testing makes use of omics technologies to address critical questions in toxicology and chemical management. Of interest are questions relating to chemical mechanisms of toxicity, differences in species sensitivity, and translation of molecular effects to observable apical endpoints. Our study addressed these questions by comparing apical outcomes and multiple omics responses in early-life stage exposure studies with Japanese quail (JQ; Coturnix japonica) and double crested cormorant (DCCO; Phalacrocorax auritus), representing a model and ecological species, respectively. more...

Organism:: Coturnix japonica; Phalacrocorax auritus

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL30378 GPL29437
29 Samples

Download data: TXT

Series

Accession:: GSE179770

ID:: 200179770

PubMed Similar studies SRA Run Selector

Select item 20016197613.

Study of the hypothalamic transcriptome of thermally manipulated during embryogenesis and control Japanese quails submitted or not to a heat challenge at 35 days of age

(Submitter supplied) The goal of the sequencing project was to identify differentially expressed genes between four treatments (12 hypothalamus samples from quail per treatment, 6 from each sex).

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29437
48 Samples

Download data: TXT

Series

Accession:: GSE161976

ID:: 200161976

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20011900814.

Japanese quail embryonic skin samples

(Submitter supplied) To understand molecular mechanism of stripe patterning in the embryonic skin of Japanese quail, we compared gene expression profile between black stripe and yelllow stripe by using RNA seq method. Most of differential expression genes were known pigmentation-related genes, but some are unknown role in pigment pattern formation.

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL25495
4 Samples

Download data: XLSX

Series

Accession:: GSE119008

ID:: 200119008

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20009829615.

RNA-Seq Analysis of Spleen from Chicken and Japanese Quail infected with Lentogenic and Velogenic Newcastle Disease Virus

(Submitter supplied) Newcastle disease (ND) affects a few hundred avian species including chicken, and the clinical outcome of Newcastle disease virus (NDV) infection ranges from mild to severe fatal disease depending on the NDV pathotype and the host species involved. Japanese quails serve as natural reservoirs of NDV and play important role in NDV epidemiology. While infection of chicken with velogenic NDV results in severe often fatal illness, the same infection in Japanese quails is results in in apparent infection. more...

Organism:: Gallus gallus; Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL16133 GPL19652
6 Samples

Download data: TXT

Series

Accession:: GSE98296

ID:: 200098296

SRA Run Selector

Select item 20006496116.

Comprehensive identification of sexual dimorphism-associated differentially expressed genes in two-factorial designed RNA-seq data on Japanese Quail (Coturnix coturnix japonica)

(Submitter supplied) Japanese quail (Coturnix coturnix japonica) reach sexual maturity early, breed rapidly and successfully, and cost less and require less space than other birds raised for their meat and eggs. Given the value of this species for commercial production and experimental use as well as recent increasing demand, more studies are necessary to determine chromosomal regions and genes associated with gender and breed-differentiation in the species. more...

Organism:: Coturnix japonica

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19652
12 Samples

Download data: CSV

Series

Accession:: GSE64961

ID:: 200064961

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20003071617.

A cross-species analysis of microRNAs in the developing avian face

(Submitter supplied) Avian beaks show extreme species-specific variability in morphology, though they develop from the same primordial structures. In both humans and birds, cranial neural crest cells are the primary source of mesenchyme for the frontonasal prominence; previous work has shown that these cells contain molecular information that regulate species-specific facial variation. To determine the molecular basis of avian craniofacial patterning, we have used Next-Generation sequencing to profile all 20-40nt microRNAs from micro-dissected cranial neural crest cells from the frontonasal prominence of three bird species (chickens, quails, and ducks). more...