GPL22678[Accession] - GEO DataSets

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Select item 2001909581.

On the genetic constitution of the Marquesas

(Submitter supplied) We combined new data with previously published data (PMID: 24297229, 21940856, 33753914, 27302840, 25877615, 18292342, 26811443, 30846778 and 29379068) to examine the genetic history of three groups from Marquesan Islands

Organism:: Homo sapiens

Type:: SNP genotyping by SNP array

Platforms:: GPL31092 GPL22678
32 Samples

Download data: TXT

Series

Accession:: GSE190958

ID:: 200190958

PubMed Full text in PMC Similar studies

Select item 2001521942.

The Ami and Yami aborigines of Taiwan and their genetic relationship to East Asian and Pacific populations

(Submitter supplied) We combined new data with previously published data (PMID: 25877615, 26811443, 29379068, 18292342, 24297229, 27302840, 24395773 and 30846778) to compare phylogenetic relationships of the Ami and Yami aborigenes of Taiwan to groups from mainland Southeast Asia, island Southeast Asia and Oceania.

Organism:: Homo sapiens

Type:: Genome variation profiling by SNP array; SNP genotyping by SNP array

Platform:: GPL22678
43 Samples

Download data: TXT

Series

Accession:: GSE152194

ID:: 200152194

PubMed Full text in PMC Similar studies

Select item 2001661023.

Cell-type specific multi-QTL analyses of cultured human primary melanocytes

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Methylation profiling by array; SNP genotyping by SNP array

Platforms:: GPL22678 GPL13534
230 Samples

Download data: IDAT

Series

Accession:: GSE166102

ID:: 200166102

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2001522004.

Aborigines of Taiwan and their genetic relationship to East Asian and Pacific populations

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Genome variation profiling by SNP array; SNP genotyping by SNP array

Platforms:: GPL8888 GPL22678 GPL13135
347 Samples

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Series

Accession:: GSE152200

ID:: 200152200

PubMed Full text in PMC Similar studies

Select item 2000986205.

Trunk events present minimal intra- and inter-tumoral heterogeneity in hepatocellular carcinoma

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by array; Genome variation profiling by SNP array

4 related Platforms
315 Samples

Download data

Series

Accession:: GSE98620

ID:: 200098620

Select item 2000986196.

Trunk events present minimal intra- and inter-tumoral heterogeneity in hepatocellular carcinoma [early CNV]

(Submitter supplied) Introduction: According to the clonal model of tumor evolution, trunk alterations arise at early stages and are ubiquitous. Through the characterization of early stages of hepatocarcinogenesis, we aimed to identify trunk alterations in HCC and study their intra- and inter-tumor distribution in more advanced lesions. Methods: 151 samples representing the multi-step process of hepatocarcinogenesis were analyzed by targeted-sequencing and SNP array. more...

Organism:: Homo sapiens

Type:: Genome variation profiling by SNP array

Platform:: GPL22678
82 Samples

Download data: TXT

Series

Accession:: GSE98619

ID:: 200098619

PubMed Similar studies

Select item 2001268827.

The genetic legacy of continental scale admixture in Indian Austroasiatic speakers

(Submitter supplied) We combined new data with previously published data to characterize admixture patterns of Austroasiatic speaking populations of India in the context of their geographic neighbours across Eurasia

Organism:: Homo sapiens

Type:: Genome variation profiling by SNP array; SNP genotyping by SNP array

Platforms:: GPL22678 GPL8888
39 Samples

Download data: TXT

Series

Accession:: GSE126882

ID:: 200126882

PubMed Full text in PMC Similar studies

Select item 2001017718.

Expression quantitative trait loci of primary melanocytes facilitate identification of melanoma susceptibility genes

(Submitter supplied) eQTL is a powerful method to detect genotype-expression correlation. To be able to identify the genes whose expression levels are correlated with germline genetic variants including the ones associated with melanoma, eQTL analysis was performed in 106 primary melanocyte cultrures

Organism:: Homo sapiens

Type:: SNP genotyping by SNP array

Platform:: GPL22678
124 Samples

Download data: IDAT, TXT

Series

Accession:: GSE101771

ID:: 200101771

PubMed Full text in PMC Similar studies

Select item 2001236959.

Germline variant in SLCO2B1 and response to abiraterone acetate plus prednisone (AA) in new onset metastatic castration-resistant prostate cancer (mCRPC)

(Submitter supplied) There are many treatment options available for men with metastatic castration-resistant prostate cancer (mCRPC). Yet, biomarkers predictive of differential response to treatment are currently available. A recent translational study suggested that SLCO2B1 genotype could predict response to abiraterone acetate (AA) for men with advanced prostate cancer. Here, we investigate whether germline variants in SLCO2B1 are predictive of response to first-line AA in men with new mCRPC. more...

Organism:: Homo sapiens

Type:: Genome variation profiling by SNP array

Platforms:: GPL21168 GPL25924 GPL22678
79 Samples

Download data: TXT

Series

Accession:: GSE123695

ID:: 200123695

PubMed Similar studies

Select item 20011965310.

The genetic ancestry of modern Indus Valley populations from Northwest India

(Submitter supplied) We genotyped 45 new samples from 4 populations of Northwest India and combined it with previously published data to characterize the population structure of modern Northwest Indian populations in the context of their geographic neighbors across South Asia and West Eurasia.

Organism:: Homo sapiens

Type:: SNP genotyping by SNP array

Platforms:: GPL22678 GPL21168
45 Samples

Download data: TXT

Series

Accession:: GSE119653

ID:: 200119653

PubMed Full text in PMC Similar studies

Select item 20011374311.

Establishment and characterization of prostate cancer organoids

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Genome variation profiling by SNP array; Expression profiling by high throughput sequencing

Platforms:: GPL21290 GPL22678 GPL16791
20 Samples

Download data: TXT

Series

Accession:: GSE113743

ID:: 200113743

PubMed Full text in PMC Similar studies

Select item 20011370912.

Establishment and characterization of prostate cancer organoids [array]

(Submitter supplied) Prostate cancer translational research has been hampered by the lack of comprehensive and tractable models that represent the genomic landscape of clinical disease. Metastatic castrate-resistant prostate cancer (mCRPC) patient derived xenografts (PDXs) recapitulate the genetic and phenotypic diversity of the disease. We sought to establish a representative, preclinical platform of PDX-derived organoids that is experimentally facile for high throughput and mechanistic analysis.

Organism:: Homo sapiens

Type:: Genome variation profiling by SNP array

Platform:: GPL22678
12 Samples

Download data: SEG

Series

Accession:: GSE113709

ID:: 200113709

PubMed Full text in PMC Similar studies

Select item 20009947313.

SNP Genotype and Gene Expression data from induced Pluripotent Stem cells from Parkinson's Disease patients harboring mutations in the GBA1 gene, and from healthy control donors

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by array; SNP genotyping by SNP array; Genome variation profiling by SNP array

Platforms:: GPL13829 GPL10558 GPL22678
18 Samples

Download data

Series

Accession:: GSE99473

ID:: 200099473

Analyze with GEO2R

Select item 20009947114.

SNP genotype data from induced Pluripotent Stem cells from Parkinson's Disease patients harboring mutations in the GBA1 gene, and from healthy control donors

(Submitter supplied) We have generated human induced Pluripotent Stem cells (hiPSc) using Retroviral and Sendai virus-mediated delivery of reprogramming factors. hiPSc lines have been screened using SNP array to assess chromosomal stability (alongside the fibroblast lines from which they were derived), and validation of the pluripotency of the hiPSc lines is provided by Pluritest assessment of transcriptome datasets, prior to differentiation and downstream assays. more...

Organism:: Homo sapiens

Type:: SNP genotyping by SNP array; Genome variation profiling by SNP array

Platforms:: GPL13829 GPL22678
13 Samples

Download data: TXT

Series

Accession:: GSE99471

ID:: 200099471

Select item 20009328515.

Human induced pluripotent stem cell-derived macrophages share ontogeny with MYB-independent tissue-resident macrophages

(Submitter supplied) Tissue-resident macrophages such as microglia, Kupffer and Langerhans cells derive from Myb-independent yolk sac (YS) progenitors generated before the emergence of hematopoietic stem cells (HSCs). Myb-independent YS-derived resident macrophages self-renew locally, independently of circulating monocytes and HSCs. In contrast, adult blood monocytes as well as infiltrating, gut and dermal macrophages derive from Myb-dependent HSCs. more...

Organism:: Homo sapiens

Type:: SNP genotyping by SNP array

Platform:: GPL22678
7 Samples

Download data: TXT

Series

Accession:: GSE93285

ID:: 200093285

PubMed Full text in PMC Similar studies

Select item 20008988616.

Gene expression data from induced Pluripotent Stem cells from Parkinson's Disease patients harbouring amplification of, or mutations in the SNCA gene, and from healthy control donors

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by array; SNP genotyping by SNP array

4 related Platforms
32 Samples

Download data

Series

Accession:: GSE89886

ID:: 200089886

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20008987817.

Gene expression data from induced Pluripotent Stem cells from Parkinson's Disease patients harbouring amplification of, or mutations in the SNCA gene, and from healthy control donors [genotype]

(Submitter supplied) We have generated human induced Pluripotent Stem cells (hiPSc) using Sendai virus-mediated delivery of reprogramming factors. hiPSc lines have been screened using SNP array to assess chromosomal stability (alongside the fibroblast lines from which they derived), and validation of the pluripotency of the hiPSc lines is provided by Pluritest assessment of transcriptome datasets, prior to differentiation and downstream assays. more...