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Items: 1 to 20 of 84

1.

HPV integration generates cellular super enhancer and functions as ecDNA to regulate genome-wide transcription

(Submitter supplied) Human papillomavirus (HPV) integration is a critical step in cervical cancer development, while the oncogenic mechanism in genome-wide transcriptional level is still poorly understood. In this study, we employed integrative analysis on multi-omics data of cervical cancer cell lines. Through HPV integration detection, super enhancer (SE) identification, SE-associated gene expression and extrachromosomal DNA (ecDNA) investigation, we aimed to explore the genome-wide transcriptional influence of HPV integration. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Methylation profiling by high throughput sequencing
6 related Platforms
77 Samples
Download data: BW, HIC, TXT, XLS
Series
Accession:
GSE195631
ID:
200195631

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

MGISEQ-2000RS (Homo sapiens)

Organism:
Homo sapiens
123 Series
2580 Samples
Download data
Platform
Accession:
GPL30209
ID:
100030209

3.

PromethION (Homo sapiens)

Organism:
Homo sapiens
80 Series
402 Samples
Download data
Platform
Accession:
GPL26167
ID:
100026167

4.

Illumina NovaSeq 6000 (Homo sapiens)

Organism:
Homo sapiens
16110 Series
914484 Samples
Download data
Platform
Accession:
GPL24676
ID:
100024676

5.

BGISEQ-500 (Homo sapiens)

Organism:
Homo sapiens
669 Series
8045 Samples
Download data
Platform
Accession:
GPL23227
ID:
100023227

6.

HiSeq X Ten (Homo sapiens)

Organism:
Homo sapiens
2022 Series
35062 Samples
Download data
Platform
Accession:
GPL20795
ID:
100020795

7.

Illumina HiSeq 2500 (Homo sapiens)

Organism:
Homo sapiens
12037 Series
347342 Samples
Download data
Platform
Accession:
GPL16791
ID:
100016791

8.

S12 WGS

Organism:
Homo sapiens
Source name:
S12
Platform:
GPL23227
Series:
GSE195631
Download data
Sample
Accession:
GSM6658943
ID:
306658943

SRA Run Selector

9.

Raji WGS

Organism:
Homo sapiens
Source name:
Raji
Platform:
GPL23227
Series:
GSE195631
Download data
Sample
Accession:
GSM6658942
ID:
306658942

SRA Run Selector

10.

CaSki WGS

Organism:
Homo sapiens
Source name:
CaSki
Platform:
GPL23227
Series:
GSE195631
Download data
Sample
Accession:
GSM6658939
ID:
306658939

SRA Run Selector

11.

C33A WGS

Organism:
Homo sapiens
Source name:
C33A
Platform:
GPL23227
Series:
GSE195631
Download data
Sample
Accession:
GSM6658938
ID:
306658938

SRA Run Selector

12.

SiHa WGBS

Organism:
Homo sapiens
Source name:
SiHa
Platform:
GPL20795
Series:
GSE195631
Download data: TXT
Sample
Accession:
GSM6658937
ID:
306658937

SRA Run Selector

13.

S12 WGBS

Organism:
Homo sapiens
Source name:
S12
Platform:
GPL20795
Series:
GSE195631
Download data: TXT
Sample
Accession:
GSM6658936
ID:
306658936

SRA Run Selector

14.

HeLa WGBS

Organism:
Homo sapiens
Source name:
HeLa
Platform:
GPL20795
Series:
GSE195631
Download data: TXT
Sample
Accession:
GSM6658935
ID:
306658935

SRA Run Selector

15.

CaSki WGBS

Organism:
Homo sapiens
Source name:
CaSki
Platform:
GPL20795
Series:
GSE195631
Download data: TXT
Sample
Accession:
GSM6658934
ID:
306658934

SRA Run Selector

16.

C33A WGBS

Organism:
Homo sapiens
Source name:
C33A
Platform:
GPL20795
Series:
GSE195631
Download data: TXT
Sample
Accession:
GSM6658933
ID:
306658933

SRA Run Selector

17.

SiHa Hi-C

Organism:
Homo sapiens
Source name:
SiHa
Platform:
GPL20795
Series:
GSE195631
Download data: HIC
Sample
Accession:
GSM6658915
ID:
306658915

SRA Run Selector

18.

S12 Hi-C

Organism:
Homo sapiens
Source name:
S12
Platform:
GPL20795
Series:
GSE195631
Download data: HIC
Sample
Accession:
GSM6658914
ID:
306658914

SRA Run Selector

19.

HeLa Hi-C

Organism:
Homo sapiens
Source name:
HeLa
Platform:
GPL20795
Series:
GSE195631
Download data: HIC
Sample
Accession:
GSM6658912
ID:
306658912

SRA Run Selector

20.

CaSki Hi-C

Organism:
Homo sapiens
Source name:
CaSki
Platform:
GPL20795
Series:
GSE195631
Download data: HIC
Sample
Accession:
GSM6658910
ID:
306658910

SRA Run Selector

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