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GEO help: Mouse over screen elements for information. |
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Status |
Public on Feb 07, 2019 |
Title |
PromethION (Homo sapiens) |
Technology type |
high-throughput sequencing |
Distribution |
virtual |
Organism |
Homo sapiens |
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Submission date |
Feb 07, 2019 |
Last update date |
Feb 07, 2019 |
Contact name |
GEO |
Country |
USA |
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Samples (379)
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GSM3595457, GSM3595458, GSM3595459, GSM3595460, GSM4066219, GSM4073916
GSM4073917, GSM4490691, GSM4711013, GSM4711015, GSM4712207, GSM4826677, GSM4826678, GSM4826679, GSM4826680, GSM4826681, GSM4826682, GSM4826683, GSM4837257, GSM4837258, GSM5031743, GSM5236049, GSM5236050, GSM5242380, GSM5242381, GSM5242382, GSM5242383, GSM5255692, GSM5255693, GSM5255694, GSM5255701, GSM5255702, GSM5255703, GSM5322188, GSM5322189, GSM5322190, GSM5322191, GSM5322192, GSM5322193, GSM5322194, GSM5322195, GSM5322196, GSM5322197, GSM5322198, GSM5322199, GSM5322200, GSM5322201, GSM5322202, GSM5322203, GSM5322204, GSM5322205, GSM5322206, GSM5322207, GSM5322208, GSM5322209, GSM5322210, GSM5322211, GSM5322212, GSM5322213, GSM5322214, GSM5322215, GSM5322216, GSM5322217, GSM5381317, GSM5381318, GSM5825629, GSM5825630, GSM5825631, GSM5825632, GSM5825633, GSM5923734, GSM5923735, GSM5952362, GSM5952363, GSM5952364, GSM5952365, GSM5952366, GSM5952367, GSM5952368, GSM5952369, GSM6065194, GSM6065195, GSM6065196, GSM6065197, GSM6065198, GSM6065199, GSM6065200, GSM6065201, GSM6124010, GSM6124011, GSM6124012, GSM6124013, GSM6254963, GSM6254964, GSM6254965, GSM6254966, GSM6254967, GSM6254968, GSM6254969, GSM6254970, GSM6254971, GSM6254972, GSM6254973, GSM6254974, GSM6254975, GSM6254976, GSM6254977, GSM6254978, GSM6254979, GSM6254980, GSM6284586, GSM6284587, GSM6284588, GSM6284589, GSM6284590, GSM6337767, GSM6337768, GSM6337769, GSM6387640, GSM6387641, GSM6387642, GSM6387643, GSM6387644, GSM6387645, GSM6387646, GSM6387647, GSM6387648, GSM6387649, GSM6387650, GSM6387651, GSM6387652, GSM6387653, GSM6387654, GSM6387655, GSM6564300, GSM6564301, GSM6564302, GSM6564303, GSM6564304, GSM6564305, GSM6632539, GSM6637580, GSM6637581, GSM6658918, GSM6658919, GSM6658944, GSM6706394, GSM6706395, GSM6706396, GSM6706397, GSM6706398, GSM6706401, GSM6732990, GSM6732991, GSM6733214, GSM6733215, GSM6733216, GSM6733217, GSM6733218, GSM6733219, GSM6733220, GSM6733221, GSM6733222, GSM6733223, GSM6733224, GSM6733225, GSM6733226, GSM6733227, GSM6733228, GSM6733229, GSM6733230, GSM6733231, GSM6733232, GSM6733233, GSM6733234, GSM6733235, GSM6733236, GSM6733237, GSM6733238, GSM6733239, GSM6733240, GSM6733241, GSM6733242, GSM6733243, GSM6733244, GSM6733245, GSM6733246, GSM6733247, GSM6733248, GSM6733249, GSM6754750, GSM6758382, GSM6758383, GSM6758384, GSM6758385, GSM6758386, GSM6758387, GSM6758388, GSM6758389, GSM6758390, GSM6758391, GSM6758945, GSM6777840, GSM6777841, GSM6777842, GSM6777843, GSM6777844, GSM6777845, GSM6777846, GSM6777847, GSM6777848, GSM6777849, GSM6939525, GSM6939526, GSM6939527, GSM6939528, GSM6939529, GSM6939530, GSM6957733, GSM6957734, GSM7010233, GSM7024433, GSM7024434, GSM7089881, GSM7089882, GSM7089883, GSM7089884, GSM7089885, GSM7093687, GSM7093688, GSM7093689, GSM7093690, GSM7110662, GSM7110663, GSM7110664, GSM7110665, GSM7140100, GSM7140101, GSM7140102, GSM7140103, GSM7140104, GSM7140105, GSM7140106, GSM7140107, GSM7140108, GSM7140109, GSM7140110, GSM7140111, GSM7140112, GSM7140113, GSM7140114, GSM7140115, GSM7140116, GSM7140117, GSM7140118, GSM7140119, GSM7140120, GSM7140121, GSM7140122, GSM7140123, GSM7140124, GSM7140125, GSM7140126, GSM7140127, GSM7140128, GSM7140129, GSM7140130, GSM7140131, GSM7140132, GSM7140133, GSM7140134, GSM7140135, GSM7140136, GSM7140137, GSM7140138, GSM7667554, GSM7702389, GSM7702391, GSM7702393, GSM7702395, GSM7703591, GSM7703612, GSM7703614, GSM7745757, GSM7745758, GSM7745759, GSM7745760, GSM7745761, GSM7745762, GSM7745763, GSM7745764, GSM7745765, GSM7745766, GSM7745767, GSM7745768, GSM7748879, GSM7748880, GSM7748881, GSM7748882, GSM7748883, GSM7748884, GSM7754985, GSM7754986, GSM7754987, GSM7754988, GSM7754989, GSM7754990, GSM7754991, GSM7754992, GSM7754993, GSM7754994, GSM7754995, GSM7754996, GSM7823424, GSM7823425, GSM7823426, GSM7823427, GSM7823428, GSM7823429, GSM7823430, GSM7823431, GSM7823432, GSM7823433, GSM7823434, GSM7823435, GSM7823436, GSM7823437, GSM7823438, GSM7823439, GSM7824345, GSM7824346, GSM7906066, GSM7906067, GSM7906068, GSM7906069, GSM7906070, GSM7906071, GSM7906072, GSM7906073, GSM7906077, GSM7979049, GSM7979050, GSM7979051, GSM7979106, GSM7979107, GSM7979108, GSM8125082, GSM8125083, GSM8125084, GSM8125085, GSM8141937, GSM8170408, GSM8170409, GSM8170410, GSM8170411, GSM8170412, GSM8170413, GSM8186200, GSM8186201, GSM8186202, GSM8186203, GSM8214574, GSM8214575, GSM8214576, GSM8214577, GSM8214578, GSM8214579, GSM8214580, GSM8214581, GSM8214582, GSM8214583, GSM8214584, GSM8214585, GSM8214586, GSM8214587, GSM8214588, GSM8214589, GSM8214590, GSM8214591
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Series (75)
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GSE118158 |
Targeted, long-read RNA sequencing of non-coding genomic regions associated with neuropsychiatric functions. |
GSE123191 |
Human co-transcriptional splicing kinetics and coordination revealed by direct nascent RNA sequencing |
GSE137048 |
miRNA-independent function of long noncoding pri-miRNA loci |
GSE149117 |
Pore-C: Combination of chromatin capture assay and Oxford Nanopore Technology long read sequencing. |
GSE155708 |
Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes [NP] |
GSE155729 |
Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes |
GSE155791 |
Methylation and accessibility profiling of GM12878, MCF-10A, MCF-7, and MDA-MB-231 using nanopore sequencing |
GSE158011 |
DNA methylation maintains integrity of higher order genome architecture |
GSE159297 |
Transient naive reprogramming corrects hiPS cells functionally and epigenetically |
GSE159326 |
POINT technology illuminates the processing of polymerase-associated intact nascent transcripts |
GSE159663 |
DNA methylation maintains integrity of higher order genome architecture (Nanopore) |
GSE162053 |
High throughput error correction using dual nucleotide dimer blocks allows direct single-cell nanopore transcriptome sequencing |
GSE171882 |
RNA-Seq analysis (long-reads) of human parental M238P and BRAF inhibitors-resistant M238R melanoma cells |
GSE171883 |
Blockade of the pro-fibrotic reaction mediated by the miR-143/-145 cluster enhances the responses to targeted therapy in melanoma |
GSE172124 |
The pan-cancer lncRNA PLANE regulates an alternative splicing program and promotes cancer pathogenesis [ONT] |
GSE172421 |
Long and short-read transcriptome profiling of human lung cancer cell lines |
GSE174668 |
A multi-omics investigation on the composition and physiological function of extracellular vesicles along the temporal trajectory of COVID-19 |
GSE178175 |
Single-nuclei isoform RNA sequencing reveals combination patterns of transcript elements across human brain cell types |
GSE194022 |
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing [DataSet1: scNanoATAC-seq] |
GSE194024 |
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing |
GSE195631 |
HPV integration generates cellular super enhancer and functions as ecDNA to regulate genome-wide transcription |
GSE198568 |
Full-length transcriptome sequencing reveals gene expression signatures in human soft tissue sarcomas |
GSE201470 |
Inhibition of DNMT1 methyltransferase activity via glucose-regulated O-GlcNAcylation alters the epigenome |
GSE202539 |
in situ HiPore-C reveals higher-order 3D genome folding principles |
GSE204845 |
Single-cell multi-omics defines the cell-type specific impact of splicing aberrations in human hematopoietic clonal outgrowths |
GSE206464 |
Nanopore sequencing combining AlphaFold2 identifies alternative splicing derived putative neoantigens in uveal melanoma |
GSE208125 |
Protocol for Mapping Protein-DNA Interactions with Directed Methylation with Long-read Sequecing (DiMeLo-seq) |
GSE208259 |
pre-mRNA splicing order is defined and maintains splicing fidelity across multi-intronic transcripts [II] |
GSE209739 |
Effect of PDGF, TGF-β and miR-221 on gene expression during proliferation and differentiation of human aortic smooth muscle cells |
GSE212945 |
High throughput single cell long-read sequencing analyses of same-cell genotypes and phenotypes in human tumors. |
GSE215327 |
Enhanced myogenesis through LncFAM-mediated recruitment of HNRNPL to the MYBPC2 promoter II |
GSE215343 |
Enhanced myogenesis through LncFAM-mediated recruitment of HNRNPL to the MYBPC2 promoter |
GSE215459 |
Pseudogenes limit the identification of novel common transcripts generated by their parent genes |
GSE217189 |
scNanoHi-C: a single-cell long-read concatemer sequencing method to reveal high-order structures within individual cells |
GSE218035 |
Long-read transcriptome sequencing reveals expression characteristics of osteosarcoma |
GSE218679 |
Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome [Nanopore] |
GSE218680 |
Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome |
GSE218899 |
Counting and correcting errors within unique molecular identifiers to generate absolute numbers of sequencing molecules [RNA-seq] |
GSE218901 |
Counting and correcting errors within unique molecular identifiers to generate absolute numbers of sequencing molecules [scRNA-Seq] |
GSE218903 |
Counting and correcting errors within unique molecular identifiers to generate absolute numbers of sequencing molecules |
GSE219205 |
Integrated whole-exome and transcriptome sequencing indicated dysregulation of cholesterol metabolism in eyelid sebaceous gland carcinoma |
GSE221053 |
Transposable elements as lineage-specific enhancers in endodermal-lineage cancers |
GSE223088 |
Long-read nanopore sequencing (Nanopore-seq) of PQBP1 knockdown in ovarian cancer cells |
GSE223263 |
Autonomous transposons tune their sequences to ensure somatic suppression. |
GSE224045 |
Designing a single cell ATAC-Seq (scATAC-Seq) dataset to validate long read RNA-Seq isoforms and benchmark scATAC-Seq analysis methods II |
GSE224453 |
Transposable elements as lineage-specific enhancers in endodermal-lineage cancers [NaNoME-seq] |
GSE227000 |
Long-read transcriptome profiling of human lung cancer cell lines |
GSE227911 |
Comprehensive Assessment of Isoform Detection Methods for Third-Generation Sequencing Data |
GSE228840 |
COVID-19 vaccination is associated with attenuation of inflammatory responses during breakthrough disease [long-read RNA-Seq] |
GSE228842 |
COVID-19 vaccination is associated with attenuation of inflammatory responses during breakthrough disease |
GSE232455 |
pre-mRNA splicing order is defined and maintains splicing fidelity across multi-intronic transcripts |
GSE239579 |
Transient naive reprogramming corrects hiPS cells functionally and epigenetically [ONT DNA-seq] |
GSE240568 |
Regulation by the RNA-binding protein Unkempt at its effector interface [Tail seq] |
GSE240571 |
Regulation by the RNA-binding protein Unkempt at its effector interface |
GSE241932 |
Transcriptomic profiling of ccRCC nephrectomy samples by Direct RNAseq |
GSE242084 |
Long read transcriptome sequencing of ccRCC tumour cell line RCC4 |
GSE242143 |
DNA methylation status determines the sensitivity of repeats to restriction by the HUSH-MORC2 complex |
GSE242204 |
Transcriptomic profiling of ccRCC nephrectomy samples by PCR-cDNAseq |
GSE244655 |
Long read subcellular fractionation and sequencing reveals the translational fate of full length mRNA isoforms during neuronal differentiation |
GSE244701 |
Autonomous transposons tune their sequences to ensure somatic suppression [directRNA_HEK293] |
GSE248114 |
Accurate long-read transcript discovery and quantification at single-cell resolution with Isosceles [RNA-seq] |
GSE248115 |
Accurate long-read transcript discovery and quantification at single-cell resolution with Isosceles [scRNA-seq] |
GSE248118 |
Accurate long-read transcript discovery and quantification at single-cell resolution with Isosceles |
GSE250427 |
High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing [BCBL-1-direct-cDNA-Seq] |
GSE250434 |
High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing [iSLK-WTBAC-PCR-cDNA-Seq] |
GSE250435 |
High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing |
GSE260827 |
Engineered CRISPR-Cas12a for higher-order combinatorial chromatin perturbations (Nanopore) |
GSE260832 |
Engineered CRISPR-Cas12a for higher-order combinatorial chromatin perturbations |
GSE261391 |
CRISPR Screening Uncovers a Long-Range Enhancer for ONECUT1 in Pancreatic Differentiation and Links a Diabetes Risk Variant [long_read_seq] |
GSE262482 |
DNA methylation status determines the sensitivity of repeats to restriction by the HUSH-MORC2 complex [ONT whole genome DNA] |
GSE262483 |
DNA methylation status determines the sensitivity of repeats to restriction by the HUSH-MORC2 complex [ONT cDNA sequencing] |
GSE263126 |
Identification of hypoxia-induced isoforms and novel genes with nanopore long reads sequencing |
GSE264218 |
Sequencing-Guided Design of Genetically Encoded Small RNAs Targeting CAG Repeats for Selective Inhibition of Mutant Huntingtin [II] |
GSE264444 |
Sequencing-Guided Design of Genetically Encoded Small RNAs Targeting CAG Repeats for Selective Inhibition of Mutant Huntingtin |
GSE267330 |
CRISPR Screening Uncovers a Long-Range Enhancer for ONECUT1 in Pancreatic Differentiation and Links a Diabetes Risk Variant |
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Supplementary data files not provided |
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