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1.

Transcriptome of a Synthetic Microbial Community

(Submitter supplied) To explore the ecological basis for multiple bacteria species coexistence, we set up three bacteria (Ruegeria pomeroyi DSS-3, Vibrio hepatarius HF70, and Thalassospira sp. HF15), either in monoculture or in co-cultures (in all combinations) for a 8 day growth-dilution cycles. At ~15h of day 4 (P4) and day 8 (P8) of growth-dilution cycles, we examined transcriptomic responses of these bacteria. Differential gene expressions were used to generate hypothesis about ecological and physiological responses of one in the presence of another/other bacteria.
Organism:
Ruegeria pomeroyi DSS-3; Vibrio hepatarius; Thalassospira sp. HF15
Type:
Expression profiling by high throughput sequencing
4 related Platforms
40 Samples
Download data: XLSX
Series
Accession:
GSE199797
ID:
200199797
2.

Illumina NextSeq 500 (Ruegeria pomeroyi DSS-3; Thalassospira sp. HF15)

Organism:
Ruegeria pomeroyi DSS-3; Thalassospira sp. HF15
1 Series
8 Samples
Download data
Platform
Accession:
GPL32097
ID:
100032097
3.

Illumina NextSeq 500 (Thalassospira sp. HF15; Vibrio hepatarius)

Organism:
Vibrio hepatarius; Thalassospira sp. HF15
1 Series
8 Samples
Download data
Platform
Accession:
GPL32096
ID:
100032096
4.

Illumina NextSeq 500 (Ruegeria pomeroyi DSS-3; Thalassospira sp. HF15; Vibrio hepatarius)

Organism:
Vibrio hepatarius; Ruegeria pomeroyi DSS-3; Thalassospira sp. HF15
1 Series
16 Samples
Download data
Platform
Accession:
GPL32094
ID:
100032094
5.

V+T_P8_reP8

Organism:
Vibrio hepatarius; Thalassospira sp. HF15
Source name:
bacterial cells
Platform:
GPL32096
Series:
GSE199797
Download data
Sample
Accession:
GSM5984958
ID:
305984958
6.

V+T_P8_rep3

Organism:
Vibrio hepatarius; Thalassospira sp. HF15
Source name:
bacterial cells
Platform:
GPL32096
Series:
GSE199797
Download data
Sample
Accession:
GSM5984957
ID:
305984957
7.

V+T_P8_rep2

Organism:
Vibrio hepatarius; Thalassospira sp. HF15
Source name:
bacterial cells
Platform:
GPL32096
Series:
GSE199797
Download data
Sample
Accession:
GSM5984956
ID:
305984956
8.

V+T_P8_rep1

Organism:
Vibrio hepatarius; Thalassospira sp. HF15
Source name:
bacterial cells
Platform:
GPL32096
Series:
GSE199797
Download data
Sample
Accession:
GSM5984955
ID:
305984955
9.

V+T_P4_rep4

Organism:
Vibrio hepatarius; Thalassospira sp. HF15
Source name:
bacterial cells
Platform:
GPL32096
Series:
GSE199797
Download data
Sample
Accession:
GSM5984938
ID:
305984938
10.

V+T_P4_rep3

Organism:
Thalassospira sp. HF15; Vibrio hepatarius
Source name:
bacterial cells
Platform:
GPL32096
Series:
GSE199797
Download data
Sample
Accession:
GSM5984937
ID:
305984937
11.

V+T_P4_rep2

Organism:
Vibrio hepatarius; Thalassospira sp. HF15
Source name:
bacterial cells
Platform:
GPL32096
Series:
GSE199797
Download data
Sample
Accession:
GSM5984936
ID:
305984936
12.

V+T_P4_rep1

Organism:
Vibrio hepatarius; Thalassospira sp. HF15
Source name:
bacterial cells
Platform:
GPL32096
Series:
GSE199797
Download data
Sample
Accession:
GSM5984935
ID:
305984935
13.

R+T+V_P8_reP8

Organism:
Thalassospira sp. HF15; Vibrio hepatarius; Ruegeria pomeroyi DSS-3
Source name:
bacterial cells
Platform:
GPL32094
Series:
GSE199797
Download data
Sample
Accession:
GSM5984966
ID:
305984966
14.

R+T+V_P8_rep3

Organism:
Ruegeria pomeroyi DSS-3; Thalassospira sp. HF15; Vibrio hepatarius
Source name:
bacterial cells
Platform:
GPL32094
Series:
GSE199797
Download data
Sample
Accession:
GSM5984965
ID:
305984965
15.

R+T+V_P8_rep2

Organism:
Ruegeria pomeroyi DSS-3; Thalassospira sp. HF15; Vibrio hepatarius
Source name:
bacterial cells
Platform:
GPL32094
Series:
GSE199797
Download data
Sample
Accession:
GSM5984964
ID:
305984964
16.

R+T+V_P8_rep1

Organism:
Ruegeria pomeroyi DSS-3; Thalassospira sp. HF15; Vibrio hepatarius
Source name:
bacterial cells
Platform:
GPL32094
Series:
GSE199797
Download data
Sample
Accession:
GSM5984963
ID:
305984963
17.

pooled monoculture (Rpom_Vib70_Tha15) P8 rep4

Organism:
Thalassospira sp. HF15; Vibrio hepatarius; Ruegeria pomeroyi DSS-3
Source name:
bacterial cells
Platform:
GPL32094
Series:
GSE199797
Download data
Sample
Accession:
GSM5984950
ID:
305984950
18.

pooled monoculture (Rpom_Vib70_Tha15) P8 rep3

Organism:
Ruegeria pomeroyi DSS-3; Thalassospira sp. HF15; Vibrio hepatarius
Source name:
bacterial cells
Platform:
GPL32094
Series:
GSE199797
Download data
Sample
Accession:
GSM5984949
ID:
305984949
19.

pooled monoculture (Rpom_Vib70_Tha15) P8 rep2

Organism:
Ruegeria pomeroyi DSS-3; Thalassospira sp. HF15; Vibrio hepatarius
Source name:
bacterial cells
Platform:
GPL32094
Series:
GSE199797
Download data
Sample
Accession:
GSM5984948
ID:
305984948
20.

pooled monoculture (Rpom_Vib70_Tha15) P8 rep1

Organism:
Ruegeria pomeroyi DSS-3; Thalassospira sp. HF15; Vibrio hepatarius
Source name:
bacterial cells
Platform:
GPL32094
Series:
GSE199797
Download data
Sample
Accession:
GSM5984947
ID:
305984947
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db=gds|term=txid2722755[Organism:noexp]|query=1|qty=4|blobid=MCID_673c3b375b75c731ae387832|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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