GEO DataSets

(Submitter supplied) The goal of scRNA-seq is to identify the differential expressed genes in the wild-type D. discoideum at different developmental stages (vegetative, streaming, slug and fruiting bodies). Three biological replicates were assigned for each group and in total 12 groups were prepared for scRNA-seq libraries with 10000 cells as starting materials using Chromium Single Cell Gene Expression kit V3 (10x Genomics). more...

Organism:

Dictyostelium discoideum AX4

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL28815 GPL28816

24 Samples

Download data: TSV

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Dictyostelium discoideum; Dictyostelium discoideum AX4

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

4 related Platforms

117 Samples

Download data: H5, NARROWPEAK

(Submitter supplied) Background During infection by intracellular pathogens, a highly complex interplay occurs between the infected cell trying to degrade the invader and the pathogen which actively manipulates the host cell to enable survival and proliferation. Many intracellular pathogens pose important threats to human health and major efforts have been undertaken to better understand the host-pathogen interactions that eventually determine the outcome of the infection. more...

Organism:

Dictyostelium discoideum AX2; Dictyostelium discoideum AX4

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL24705 GPL26762

10 Samples

Download data: TXT

(Submitter supplied) ATP-binding cassette (ABC) transporters can translocate a broad spectrum of molecules across the cell membrane including physiological cargo and toxins. ABC transporters are known for the role they play in resistance towards anticancer agents in chemotherapy of cancer patients. There are 68 ABC transporters annotated in the genome of the social amoeba Dictyostelium discoideum. We have characterized more than half of these ABC transporters through a systematic study of mutations in their genes. more...

Organism:

Dictyostelium discoideum AX4

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16888

282 Samples

Download data: TAB