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GEO accession:
Series GSE137604
Query DataSets for GSE137604
Status
Public on Apr 21, 2021
Title
Role of Epigenetics in Unicellular to Multicellular Transition in Dictyostelium
Organisms
Dictyostelium discoideum
;
Dictyostelium discoideum AX4
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33947439
Submission date
Sep 17, 2019
Last update date
May 06, 2021
Contact name
Eric Greer
E-mail(s)
Eric.Greer@childrens.harvard.edu
Organization name
Boston Children's Hospital/Harvard Medical School
Department
Newborn Medicine/Department of Pediatrics
Lab
Greer Lab
Street address
320 Longwood Avenue
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (4)
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GPL26000
Illumina HiSeq 4000 (Dictyostelium discoideum)
GPL26360
Illumina NextSeq 500 (Dictyostelium discoideum)
GPL28815
Illumina HiSeq 4000 (Dictyostelium discoideum AX4)
GPL28816
Illumina NovaSeq 6000 (Dictyostelium discoideum AX4)
Samples (117)
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GSM4082885
Vegetative stage replicate 1
GSM4082886
Vegetative stage replicate 2
GSM4082887
Streaming stage replicate 1
GSM4082888
Streaming stage replicate 2
GSM4082889
Mound stage replicate 1
GSM4082890
Mound stage replicate 2
GSM4082891
Fruiting stage replicate 1
GSM4082892
Fruiting stage replicate 2
GSM4082893
V1_H3
GSM4082894
V1_input
GSM4082895
V1_H3K4me1
GSM4082896
V1_H3K4me3
GSM4082897
V1_H3K9me3
GSM4082898
V1_H3K27ac
GSM4082899
V1_H3K27me3
GSM4082900
V1_H3K36me3
GSM4082901
V2_H3
GSM4082902
V2_input
GSM4082903
V2_H3K4me1
GSM4082904
V2_H3K4me3
GSM4082905
V2_H3K9me3
GSM4082906
V2_H3K27ac
GSM4082907
V2_H3K27me3
GSM4082908
V2_H3K36me3
GSM4082909
S1_H3
GSM4082910
S1_input
GSM4082911
S1_H3K4me1
GSM4082912
S1_H3K4me3
GSM4082913
S1_H3K9me3
GSM4082914
S1_H3K27ac
GSM4082915
S1_H3K27me3
GSM4082916
S1_H3K36me3
GSM4082917
S2_H3
GSM4082918
S2_input
GSM4082919
S2_H3K4me1
GSM4082920
S2_H3K4me3
GSM4082921
S2_H3K9me3
GSM4082922
S2_H3K27ac
GSM4082923
S2_H3K27me3
GSM4082924
S2_H3K36me3
GSM4082925
M1_H3
GSM4082926
M1_input
GSM4082927
M1_H3K4me1
GSM4082928
M1_H3K4me3
GSM4082929
M1_H3K9me3
GSM4082930
M1_H3K27ac
GSM4082931
M1_H3K27me3
GSM4082932
M1_H3K36me3
GSM4082933
M2_H3
GSM4082934
M2_input
GSM4082935
M2_H3K4me1
GSM4082936
M2_H3K4me3
GSM4082937
M2_H3K9me3
GSM4082938
M2_H3K27ac
GSM4082939
M2_H3K27me3
GSM4082940
M2_H3K36me3
GSM4082941
F1_H3
GSM4082942
F1_input
GSM4082943
F1_H3K4me1
GSM4082944
F1_H3K4me3
GSM4082945
F1_H3K9me3
GSM4082946
F1_H3K27ac
GSM4082947
F1_H3K27me3
GSM4082948
F1_H3K36me3
GSM4082949
F2_H3
GSM4082950
F2_input
GSM4082951
F2_H3K4me1
GSM4082952
F2_H3K4me3
GSM4082953
F2_H3K9me3
GSM4082954
F2_H3K27ac
GSM4082955
F2_H3K27me3
GSM4082956
F2_H3K36me3
GSM4082957
Vegetative stage replicate 1 (RNA-Seq)
GSM4082958
Vegetative stage replicate 2 (RNA-Seq)
GSM4082959
Streaming stage replicate 1 (RNA-Seq)
GSM4082960
Streaming stage replicate 2 (RNA-Seq)
GSM4082961
Mound stage replicate 1 (RNA-Seq)
GSM4082962
Mound stage replicate 2 (RNA-Seq)
GSM4082963
Fruiting stage replicate 1 (RNA-Seq)
GSM4082964
Fruiting stage replicate 2 (RNA-Seq)
GSM4650320
ATAC-seq_Vegetative stage replicate 1
GSM4650321
ATAC-seq_Vegetative stage replicate 2
GSM4650322
ATAC-seq_Vegetative stage replicate 3
GSM4650323
ATAC-seq_Streaming stage replicate 1
GSM4650324
ATAC-seq_Streaming stage replicate 2
GSM4650325
ATAC-seq_Streaming stage replicate 3
GSM4650326
ATAC-seq_Mound stage replicate 1
GSM4650327
ATAC-seq_Mound stage replicate 2
GSM4650328
ATAC-seq_Mound stage replicate 3
GSM4650329
ATAC-seq_Mound stage replicate 4
GSM4650330
ATAC-seq_Fruiting stage replicate 1
GSM4650331
ATAC-seq_Fruiting stage replicate 2
GSM4650332
ATAC-seq_Fruiting stage replicate 3
GSM4654196
Fruiting stage replicate 1 [HiSeq]
GSM4654197
Fruiting stage replicate 1 [NovaSeq]
GSM4654198
Fruiting stage replicate 2 [HiSeq]
GSM4654199
Fruiting stage replicate 2 [NovaSeq]
GSM4654200
Fruiting stage replicate 3 [HiSeq]
GSM4654201
Fruiting stage replicate 3 [NovaSeq]
GSM4654202
Slug stage replicate 1 [HiSeq]
GSM4654203
Slug stage replicate 1 [NovaSeq]
GSM4654204
Slug stage replicate 2 [HiSeq]
GSM4654205
Slug stage replicate 2 [NovaSeq]
GSM4654206
Slug stage replicate 3 [HiSeq]
GSM4654207
Slug stage replicate 3 [NovaSeq]
GSM4654208
Streaming stage replicate 1 [HiSeq]
GSM4654209
Streaming stage replicate 1 [NovaSeq]
GSM4654210
Streaming stage replicate 2 [HiSeq]
GSM4654211
Streaming stage replicate 2 [NovaSeq]
GSM4654212
Streaming stage replicate 3 [HiSeq]
GSM4654213
Streaming stage replicate 3 [NovaSeq]
GSM4654214
Vegetative stage replicate 1 [HiSeq]
GSM4654215
Vegetative stage replicate 1 [NovaSeq]
GSM4654216
Vegetative stage replicate 2 [HiSeq]
GSM4654217
Vegetative stage replicate 2 [NovaSeq]
GSM4654218
Vegetative stage replicate 3 [HiSeq]
GSM4654219
Vegetative stage replicate 3 [NovaSeq]
This SuperSeries is composed of the following SubSeries:
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GSE137598
Chromatin accessibility in D. discoideium (AX2) in different developmental stages
GSE137599
Determine the genome-wide localization of histone and histone marks in different stages of D. discoideum
GSE137602
Transcriptome analysis in D. discoideium (AX2) in different developmental stages
GSE153733
Chromatin accessibility in D. discoideium (AX4) in different developemental stages [ATAC-seq II]
GSE153795
Single-cell transcriptome analysis in D. discoideum (AX4) in different developmental stages
Relations
BioProject
PRJNA565988
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE137604_RAW.tar
46.6 Mb
(http)
(custom)
TAR (of H5, NARROWPEAK)
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