GEO DataSets

(Submitter supplied) This series includes microarrays from 36 patient samples and 2 cell-culture controls, used to optimize and validate the pathogen detection microarray (Wong, et. al. 2007) Keywords: viral pathogen detection

Organism:

Viruses; Severe acute respiratory syndrome-related coronavirus; dengue virus type 1

Type:

Expression profiling by array

Platform:

GPL5159

40 Samples

Download data: TXT

(Submitter supplied) An influenza A microarray was used to type influenza A H1N1 specimens collected in Washington State and the results compared with identification by both culture and real time RT PCR. The microarray was more sensitive than conventional influenza testing. Cluster analysis of the microarray data discriminated specimens into distinct clades. Specimens from two pediatric decedents formed a unique clade upon H1 analysis. more...

Organism:

Influenza A virus

Type:

Expression profiling by array

Platform:

GPL7090

26 Samples

Download data: TXT

(Submitter supplied) Construction and Preparation of Synechocystis Spotted Microarrays: 3168 genes or putative ORFs of Synechocystis sp. PCC6803 were PCR amplified in two stages. Primary amplification was achieved using gene-specific up-stream and down-stream primers modified with adaptamer sequences and genomic DNA template. Secondary amplification was achieved using adaptamer primers and individual primary PCR product templates. more...

Organism:

Synechocystis sp. PCC 6803

1 Series

16 Samples

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(Submitter supplied) 2312 Oligonucleotide features spotted in quadruplicate; 1648 respiratory viral probes from (http://derisilab14.ucsf.edu/data/virochip/), 539 HPA 'in house' designed pathogen probes, 2 random oligomer positive controls, one each Human actin and GAPDH Clinical positive controls, 40 Cy3 dye only positive controls, 81 DMSO buffer only negative controls, Protocol: 50 and 70 mer DNA oligonucleotides, printed 'in house' on epoxy-coated Nexterion E slides (Schott UK Ltd., http://www.schott.com /uk/) using a BioRobotics Microgrid II gridder

Organism:

synthetic construct

1 Series

68 Samples

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(Submitter supplied) Microarrays have become a powerful tool for DNA-based molecular diagnostics and identification of pathogens. However, most of them target a limited range of organisms and are generally based on only one or very few genes for organism identification. Although such microarrays are proven tools for species identification, they suffer from the fact that identification is only possible for organisms for which probes were specifically pre-developed. more...

Organism:

Micrococcus luteus; Pantoea agglomerans; Escherichia coli B; synthetic construct; Pantoea stewartii; Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Escherichia coli K-12

Type:

Genome variation profiling by array

Platform:

GPL8295

23 Samples

Download data: PAIR

(Submitter supplied) The development of rapid and sensitive assays capable of detecting a wide range of infectious agents is critical for the effective diagnosis of diseases that have multiple etiologies. In recent years, many microarray-based diagnostics have been developed to identify viruses present in clinical specimens in a highly parallel fashion. Unfortunately, the rate of development of algorithms to interpret data generated from such platforms has not been commensurate. more...

Organism:

dengue virus type 4; La Crosse virus; Rift Valley fever virus; Toscana virus; Kyasanur Forest disease virus; Orthohantavirus seoulense; dengue virus type 2; Yellow fever virus; Filoviridae; Omsk hemorrhagic fever virus; California encephalitis virus; Rocio virus; Zaire ebolavirus; Reston ebolavirus; Lake Victoria marburgvirus - Angola2005; Mammarenavirus brazilense; Mammarenavirus ippyense; Flaviviridae; Arenaviridae; unidentified; Peribunyaviridae; Mammarenavirus juninense; Mammarenavirus choriomeningitidis; Mammarenavirus guanaritoense; Mammarenavirus lassaense; Mammarenavirus machupoense; Mammarenavirus praomyidis; Orthohantavirus puumalaense; dengue virus type 1; dengue virus type 3; Ebola virus - Gabon (1994-1997); Sudan ebolavirus; Ngari virus; Mammarenavirus amapariense; Mammarenavirus mopeiaense; Mammarenavirus tacaribeense; Orthohantavirus hantanense; Orthonairovirus haemorrhagiae

Type:

Other

Platform:

GPL10345

110 Samples

Download data: GPR