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Platform GPL8295 Query DataSets for GPL8295
Status Public on Mar 16, 2010
Title ACW-universal-95000-v2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism synthetic construct
Manufacturer Nimblegen
Manufacture protocol Roche NimbleGen manufactures custom, high-density DNA arrays based on its proprietary Maskless Array Synthesizer (MAS) technology. The MAS system is a bench top, solid-state, high-density DNA array fabrication instrument comprised of a maskless light projector, a reaction chamber, a personal computer, and a DNA synthesizer. Roche NimbleGen builds its arrays using photo-mediated synthesis chemistry with its MAS system.
At the heart of the system is a Digital Micromirror Device (DMD), similar to Texas Instruments' Digital Light Processor (DLP), employing a solid-state array of miniature aluminum mirrors to pattern 786,000 to 4.2 million individual pixels of light. The DMD creates "virtual masks" that replace the physical chromium masks used in traditional arrays.
These "virtual masks" reflect the desired pattern of UV light with individually addressable aluminum mirrors controlled by the computer. The DMD controls the pattern of UV light projected on the microscope slide in the reaction chamber, which is coupled to the DNA synthesizer. The UV light selectively cleaves a UV-labile protecting group at the precise location where the next nucleotide will be coupled. The patterns are coordinated with the DNA synthesis chemistry in a parallel, combinatorial manner such that 385,000 to 2.1 million unique probe features are synthesized in a single array.
Support glass
Coating aminosilane
 
Description Oligomers contains 2 parts: 13-mer random sequence and 12-mer polyT
 
Contributor(s) Pasquer F, Pelludat C, Duffy B, Frey JE
Submission date Mar 13, 2009
Last update date Mar 16, 2010
Contact name Frederique Pasquer
E-mail(s) frederique.pasquer@acw.admin.ch
Phone +41 44 783 64 24
Organization name Agroscope Changins-Waedenswil Research Station ACW
Department Plant Protection
Lab 4
Street address Schloss
City Waedenswil
ZIP/Postal code 8820
Country Switzerland
 
Samples (23) GSM416612, GSM416613, GSM416614, GSM416615, GSM416616, GSM416617 
Series (1)
GSE15391 Universal microarray for pattern-based bacterial species identification

Data table header descriptions
ID
PROBE_ID Probe name
SEQUENCE Sequence of probe (random 13-mer)

Data table
ID PROBE_ID SEQUENCE
Os_1 Nim061026_171233Pr2_037001 cgatcccgcgcga
Os_2 Nim061026_171233Pr2_037002 caggtggtcgcgt
Os_3 Nim061026_171233Pr2_037003 gcagcaaaagtac
Os_4 Nim061026_171233Pr2_037004 ccaaccgtgagcg
Os_5 Nim061026_171233Pr2_037005 gcacgcccacacg
Os_6 Nim061026_171233Pr2_037006 gtcgtcactgccg
Os_7 Nim061026_171233Pr2_037007 ttaaggaccagtc
Os_8 Nim061026_171233Pr2_037008 ataactctactgc
Os_9 Nim061026_171233Pr2_037009 tggctatgtatcg
Os_10 Nim061026_171233Pr2_037010 ccacaggatggag
Os_11 Nim061026_171233Pr2_037011 tagtctgcgttac
Os_12 Nim061026_171233Pr2_037012 tcggataaataga
Os_13 Nim061026_171233Pr2_037013 atatcttaggagt
Os_14 Nim061026_171233Pr2_037014 gcgagagcgagat
Os_15 Nim061026_171233Pr2_037015 ttcccttgtgtcg
Os_16 Nim061026_171233Pr2_037016 tcgcattggatta
Os_17 Nim061026_171233Pr2_037017 tggactctgtttc
Os_18 Nim061026_171233Pr2_037018 ggtttggtcagtc
Os_19 Nim061026_171233Pr2_037019 aacgtcaagctta
Os_20 Nim061026_171233Pr2_037020 ccattttgtgact

Total number of rows: 95049

Table truncated, full table size 4630 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL8295_2007-08-29_NimUniOligo1.ndf.gz 11.3 Mb (ftp)(http) NDF

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