GEO DataSet Links for PMC (Select 6344860) - GEO DataSets

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Links from PMC

Items: 3

Select item 2001138141.

Transcriptome-wide mapping of RNA:protein interactions of three SR proteins in HeLa cells

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing; Other; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL11154
12 Samples

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Series

Accession:: GSE113814

ID:: 200113814

PubMed Full text in PMC Similar studies

Select item 2001138132.

Transcriptome-wide mapping of RNA:protein interactions of three SR proteins in HeLa cells by iCLIP

(Submitter supplied) We used GFP-tagged SR proteins expressed at endogenous levels and iCLIP to compare the extent and pattern of SR protein binding to expression-matched lincRNAs and protein-coding RNAs

Organism:: Homo sapiens

Type:: Other

Platform:: GPL11154
10 Samples

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Series

Accession:: GSE113813

ID:: 200113813

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001138123.

WT HeLa total RNA-seq (RiboMinus)

(Submitter supplied) We sequenced total RNA from HeLa WT cells to quantify the expression of protein-coding mRNAs and lincRNAs. RPKM values were used to normalize iCLIP binding to RNA abundance.