|
| Status |
Public on Oct 31, 2018 |
| Title |
WT HeLa total RNA-seq (RiboMinus) |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We sequenced total RNA from HeLa WT cells to quantify the expression of protein-coding mRNAs and lincRNAs. RPKM values were used to normalize iCLIP binding to RNA abundance.
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| |
|
| Overall design |
total RNA after rRNA removal (RiboMinus), 2 biological replicates
|
| |
|
| Contributor(s) |
Müller-McNicoll M |
| Citation(s) |
30445574 |
| |
| Submission date |
Apr 27, 2018 |
| Last update date |
Mar 27, 2019 |
| Contact name |
Michaela Müller-McNicoll |
| E-mail(s) |
mueller-mcnicoll@bio.uni-frankfurt.de
|
| Phone |
+49 69 798 42079
|
| Organization name |
Goethe University Frankfurt
|
| Department |
Institute for Cell Biology and Neuroscience
|
| Lab |
RNA Regulation Group
|
| Street address |
Max-von-Laue-Str. 13
|
| City |
Frankfurt am Main |
| ZIP/Postal code |
60438 |
| Country |
Germany |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (2) |
|
| This SubSeries is part of SuperSeries: |
| GSE113814 |
Transcriptome-wide mapping of RNA:protein interactions of three SR proteins in HeLa cells |
|
| Relations |
| BioProject |
PRJNA454025 |
| SRA |
SRP143523 |
