txid155900[Organism] - GEO DataSets - NCBI

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Select item 2000214921.

Experimental validation of HiSpOD probe design with complex background mRNA or 3 known antiense RNA and expression analysis on a contaminated groundwater sample

(Submitter supplied) HiSpOD is a new efficient functional microarrays probe design algorithm especially dedicated for the microbial ecology and environmental studies. It was used to design 3392 probes targeting 21 genes involved in chlorinated solvent biodegradation pathways and synthesized on a nimblegen microarray. In order to test the probe specificity, the microarray was firstly hybridized to 6 µg of labelled aRNA from sheep rumen content (background aRNA). more...

Organism:: uncultured organism; synthetic construct

Type:: Expression profiling by array

Platform:: GPL10353
3 Samples

Download data: PAIR

Series

Accession:: GSE21492

ID:: 200021492

PubMed Similar studies Analyze with GEO2R

Select item 2000214022.

Expression analysis of Sphingomonas paucimobilis sp. EPA505 during biodegradation kinetics of various PAHs and detection of gene in a contaminated soil S3

(Submitter supplied) Studying eight enzymes involved in the degradation of polycyclic aromatic hydrocarbons from the model strain Sphingomonas paucimobilis sp. EPA505 using a designed microarray of 8,048 probes. During the biodegradation kinetics with phenanthrene, fluoranthene or a mix of both pollutants, we identified the targeted set of genes induced by these pollutants, compared to basal expression detected with glucose. more...

Organism:: Sphingomonas paucimobilis; uncultured organism

Type:: Expression profiling by array

Platform:: GPL10343
17 Samples

Download data: PAIR

Series

Accession:: GSE21402

ID:: 200021402

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000127423.

Phytoplankton community composition and gene expression involved in carbon and nitrogen assimilation

(Submitter supplied) A functional gene microarray was developed and used to investigate phytoplankton community composition and gene expression in the English Channel. Genes encoding the CO2 fixation enzyme RuBisCO (rbcL) and the nitrate assimilation enzyme nitrate reductase (NR) representing several major groups of phytoplankton were included as oligonucleotide probes on the 'phytoarray'. Five major groups of eukaryotic phytoplankton that possess the Type 1D rbcL gene were detected, both in terms of presence (DNA) and activity (rbcL gene expression). more...

Organism:: Dunaliella tertiolecta; Chlamydomonas reinhardtii; unidentified; Haptophyta environmental samples; Asterionellopsis glacialis; Cylindrocystis sp. UTEX 1925; uncultured organism; uncultured Chlorophyta; Phaeodactylum tricornutum; Pseudochlorella pringsheimii; uncultured eukaryote

Type:: Other

Platform:: GPL7261
19 Samples

Download data: XLS

Series

Accession:: GSE12742

ID:: 200012742

Analyze with GEO2R

Select item 3005370914.

Chlorinated solvent contaminated groundwater

Organism:: uncultured organism

Source name:: antisense mRNA from the contaminated groundwater (6µg)

Platform:: GPL10353
Series:: GSE21492

Download data: PAIR

Sample

Accession:: GSM537091

ID:: 300537091

Select item 3005370905.

Synthetic genes and sheep rumen content

Organism:: synthetic construct; uncultured organism

Source name:: 10^11 copies of mmoC, vcrA and tceA aRNA mixed with antisense mRNA from rumen (6µg)

Platform:: GPL10353
Series:: GSE21492

Download data: PAIR

Sample

Accession:: GSM537090

ID:: 300537090

Select item 3005370896.

Sheep rumen content

Organism:: uncultured organism

Source name:: antisense mRNA from rumen (6µg)

Platform:: GPL10353
Series:: GSE21492

Download data: PAIR

Sample

Accession:: GSM537089

ID:: 300537089

Select item 3005348317.

Organism:: uncultured organism

Source name:: Total DNA extracted from a contaminated soil with various PAHs

Platform:: GPL10343
Series:: GSE21402

Download data: PAIR

Sample

Accession:: GSM534831

ID:: 300534831

Select item 3003199228.

222 ng NR from ST-30A

Organism:: uncultured organism; unidentified

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319922

ID:: 300319922

Select item 3003199219.

400 ng NR from ST-2

Organism:: uncultured organism; unidentified

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319921

ID:: 300319921

Select item 30031992010.

400 ng NR from ST-82

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319920

ID:: 300319920

Select item 30031991911.

200 ng NR from ST-82

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319919

ID:: 300319919

Select item 30031991812.

400 ng NR from ST-30A

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319918

ID:: 300319918

Select item 30031991713.

100 ng rbcL from ST-109

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319917

ID:: 300319917

Select item 30031991614.

100 ng rbcL from ST-108

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319916

ID:: 300319916

Select item 30031991515.

215 ng NR from ST-79

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319915

ID:: 300319915

Select item 30031991416.

200 ng NR from ST-79

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319914

ID:: 300319914

Select item 30031991317.

2000 ng of target from RNA from ST-30B

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319913

ID:: 300319913

Select item 30031991218.

200 ng rbcL from ST-30B plus 1 ng NR

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319912

ID:: 300319912

Select item 30031991119.

400 ng rbcL from ST-30A

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319911

ID:: 300319911

Select item 30031991020.

144 ng rbcL from ST-82 (3)

Organism:: unidentified; uncultured organism

Source name:: particulate material from ~4 L of surface seawater (channel 1) 20-mer standard reference (channel 2)

Platform:: GPL7261
Series:: GSE12742

Download data: XLS

Sample

Accession:: GSM319910

ID:: 300319910

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