NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL10353 Query DataSets for GPL10353
Status Public on Apr 13, 2011
Title Nimblegen_Custom_Chloroethene_array_V01
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism synthetic construct
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description The Platform data table reflects a condensed representation of the expression array's replicates (SEQ_ID) features. The design includes 3392 probes targeting 21 genes involved in chlorinated solvent biodegradation pathways.
 
Submission date Apr 23, 2010
Last update date Apr 13, 2011
Contact name Peyret Pierre
E-mail(s) Pierre.PEYRET@univ-bpclermont.fr
Phone +33473405139
Organization name CNRS - Blaise Pascal University
Lab Laboratory Microorganisms: Genome and Environment
Street address 24, avenue des landais
City AUBIERE
ZIP/Postal code 63177
Country France
 
Samples (3) GSM537089, GSM537090, GSM537091
Series (1)
GSE21492 Experimental validation of HiSpOD probe design with complex background mRNA or 3 known antiense RNA and expression analysis on a contaminated groundwater sample

Data table header descriptions
ID PROBE_ID used as SEQ_ID
SPOT_ID Gene name used in the study
ACC_NUM GeneBank accession number(s) of the sequence(s) targeted

Data table
ID SPOT_ID ACC_NUM
amoA_SP_2x20_01 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_02 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_03 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_04 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_05 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_06 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_07 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_08 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_09 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_10 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_11 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_12 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_13 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_14 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_15 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_16 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_17 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_18 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_19 amoB L08050 REGION: 1081..2343
amoA_SP_2x20_20 amoB L08050 REGION: 1081..2343

Total number of rows: 3392

Table truncated, full table size 462 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL10353_Nimblegen_Custom_Chloroethene_array_V01.ndf.gz 23.8 Mb (ftp)(http) NDF

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap