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LOC122999940 zinc finger protein OZF-like [ Thunnus albacares (yellowfin tuna) ]

Gene ID: 122999940, updated on 22-Oct-2023

Summary

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Gene symbol
LOC122999940
Gene description
zinc finger protein OZF-like
See related
EnsemblRapid:ENSTABG00005013090 EnsemblRapid:ENSTABG00005013091
Gene type
protein coding
RefSeq status
MODEL
Organism
Thunnus albacares
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
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Genomic context

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See LOC122999940 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
100 current fThuAlb1.1 (GCF_914725855.1) 2 NC_058107.1 (28671091..28709129, complement)

Chromosome 2 - NC_058107.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 37-like Neighboring gene zinc finger protein 37-like Neighboring gene uncharacterized LOC122965398 Neighboring gene zinc finger protein 664-like Neighboring gene zinc finger protein 569-like Neighboring gene zinc finger protein 252-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058107.1 Chromosome 2 Reference fThuAlb1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas. Ciezarek AG, et al. Genome Biol Evol, 2016 Oct 5. PMID 27614233, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 2 homolog; zinc finger protein 271-like; zinc finger protein 391-like; zinc finger protein 665-like; zinc finger protein 846-like; zinc finger protein OZF-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thunnus albacares Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fThuAlb1.1

Genomic

  1. NC_058107.1 Reference fThuAlb1.1

    Range
    28671091..28709129 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044377344.1 → XP_044233279.1  zinc finger protein 2 homolog isoform X4

    Conserved Domains (2) summary
    COG5048
    Location:223 → 619
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:544 → 564
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_044377361.1 → XP_044233296.1  zinc finger protein 2 homolog isoform X6

    Conserved Domains (2) summary
    COG5048
    Location:223 → 619
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:544 → 564
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_044377352.1 → XP_044233287.1  zinc finger protein 2 homolog isoform X5

    Conserved Domains (2) summary
    COG5048
    Location:223 → 619
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:544 → 564
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_044377333.1 → XP_044233268.1  zinc finger protein 2 homolog isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:223 → 619
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:544 → 564
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_044377399.1 → XP_044233334.1  zinc finger protein 846-like isoform X11

    Conserved Domains (2) summary
    COG5048
    Location:104 → 293
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:214 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. XM_044377318.1 → XP_044233253.1  zinc finger protein 665-like isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:343 → 766
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:257 → 340
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:291 → 311
    ZF_C2H2; C2H2 Zn finger [structural motif]

  7. XM_044377326.1 → XP_044233261.1  zinc finger protein 271-like isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:231 → 654
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:465 → 485
    ZF_C2H2; C2H2 Zn finger [structural motif]

  8. XM_044377393.1 → XP_044233328.1  zinc finger protein 391-like isoform X10

    Conserved Domains (2) summary
    COG5048
    Location:264 → 427
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 258
    ZF_C2H2; C2H2 Zn finger [structural motif]

  9. XM_044377386.1 → XP_044233321.1  zinc finger protein 391-like isoform X9

    Related
    ENSTABP00005033118.1, ENSTABT00005033484.1
    Conserved Domains (2) summary
    COG5048
    Location:264 → 427
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 258
    ZF_C2H2; C2H2 Zn finger [structural motif]

  10. XM_044377369.1 → XP_044233304.1  zinc finger protein OZF-like isoform X7

    Conserved Domains (2) summary
    COG5048
    Location:159 → 479
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:291 → 311
    ZF_C2H2; C2H2 Zn finger [structural motif]

  11. XM_044377379.1 → XP_044233314.1  zinc finger protein OZF-like isoform X8

    Related
    ENSTABP00005033120.1, ENSTABT00005033486.1
    Conserved Domains (2) summary
    COG5048
    Location:163 → 448
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259 → 279
    ZF_C2H2; C2H2 Zn finger [structural motif]

RNA

  1. XR_006407865.1 RNA Sequence

  2. XR_006407868.1 RNA Sequence

  3. XR_006407869.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version