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SakoVgp1 SakoVgp1 [ Feline sakobuvirus A ]

Gene ID: 17622795, updated on 18-Aug-2023

Summary

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Gene symbol
SakoVgp1
Gene description
SakoVgp1
Locus tag
SakoVgp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Feline sakobuvirus A (isolate: FFUP1, nat-host: Felis catus)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Sakobuvirus
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Genomic context

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Sequence:
NC_022802.1 (592..7650)

NC_022802.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_022802.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Feline fecal virome reveals novel and prevalent enteric viruses. Ng TF, et al. Vet Microbiol, 2014 Jun 25. PMID 24793097, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
polyprotein
Names
L
VP0
VP3
VP1
2A
2B
2C
3A
3C
3C
3D

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_022802.1 Reference assembly

    Range
    592..7650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_008802588.1 polyprotein [Feline sakobuvirus A]

    See identical proteins and their annotated locations for YP_008802588.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8X8M410, U5XL86
    Conserved Domains (4) summary
    cd00205
    Location:523 → 697
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    pfam00910
    Location:1379 → 1482
    RNA_helicase; RNA helicase
    cl02808
    Location:1898 → 2346
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    cl13999
    Location:738 → 905
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  2. YP_008802662.1 L

  3. YP_008802663.1 VP0

    Conserved Domains (1) summary
    cd00205
    Location:205 → 368
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  4. YP_008802664.1 VP3

    Conserved Domains (1) summary
    cd00205
    Location:45 → 219
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  5. YP_008802665.1 VP1

    Conserved Domains (1) summary
    cl13999
    Location:36 → 203
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  6. YP_008802666.1 2A

  7. YP_008802667.1 2B

  8. YP_008802668.1 2C

    Conserved Domains (1) summary
    pfam00910
    Location:129 → 232
    RNA_helicase; RNA helicase

  9. YP_008802669.1 3A

  10. YP_008802670.1 3C

  11. YP_008802671.1 3C

  12. YP_008802672.1 3D

    Conserved Domains (1) summary
    cl02808
    Location:14 → 462
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
Nucleotide Protein
Heading Accession and Version

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