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APL32_gp1 polyprotein [ Kobuvirus cattle/Kagoshima-2-24-KoV/2015/JPN ]

Gene ID: 26039972, updated on 7-May-2023

Summary

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Gene symbol
APL32_gp1
Gene description
polyprotein
Locus tag
APL32_gp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Kobuvirus cattle/Kagoshima-2-24-KoV/2015/JPN (strain: Kagoshima-2-24-KoV/2015/JPN, nat-host: Bos taurus)
Lineage
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Kobuvirus
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Genomic context

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Sequence:
NC_027918.1 (804..8312)

NC_027918.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_027918.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Detection of novel kobu-like viruses in Japanese black cattle in Japan. Otomaru K, et al. J Vet Med Sci, 2016 Feb. PMID 26369290, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
polyprotein
Names
L
VP0
VP3
VP1
2A
2B
2C
3A
3B
3C
3D

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_027918.1 Reference assembly

    Range
    804..8312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009165594.1 polyprotein [Kobuvirus cattle/Kagoshima-2-24-KoV/2015/JPN]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0M5N6H6
    Conserved Domains (5) summary
    cd00205
    Location:362 → 522
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    pfam00548
    Location:1869 → 2002
    Peptidase_C3; 3C cysteine protease (picornain 3C)
    pfam00910
    Location:1503 → 1606
    RNA_helicase; RNA helicase
    cl02808
    Location:2045 → 2496
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    cl17190
    Location:1472 → 1532
    NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...

  2. YP_009167347.1 L

  3. YP_009167348.1 VP0

    Conserved Domains (1) summary
    cd00205
    Location:214 → 374
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  4. YP_009167349.1 VP3

    Conserved Domains (1) summary
    cd00205
    Location:46 → 208
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  5. YP_009167350.1 VP1

    Conserved Domains (1) summary
    cl13999
    Location:92 → 231
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  6. YP_009167351.1 2A

  7. YP_009167352.1 2B

  8. YP_009167353.1 2C

    Conserved Domains (2) summary
    pfam00910
    Location:128 → 231
    RNA_helicase; RNA helicase
    cl17190
    Location:97 → 157
    NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...

  9. YP_009167354.1 3A

  10. YP_009167355.1 3B

  11. YP_009167356.1 3C

    Conserved Domains (1) summary
    pfam00548
    Location:33 → 166
    Peptidase_C3; 3C cysteine protease (picornain 3C)

  12. YP_009167357.1 3D

    Conserved Domains (1) summary
    cl02808
    Location:17 → 468
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
Nucleotide Protein
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