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CCDC150 coiled-coil domain containing 150 [ Homo sapiens (human) ]

Gene ID: 284992, updated on 10-Oct-2024

Summary

Official Symbol
CCDC150provided by HGNC
Official Full Name
coiled-coil domain containing 150provided by HGNC
Primary source
HGNC:HGNC:26834
See related
Ensembl:ENSG00000144395 AllianceGenome:HGNC:26834
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 4.2), bone marrow (RPKM 0.6) and 6 other tissues See more
Orthologs
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Genomic context

See CCDC150 in Genome Data Viewer
Location:
2q33.1
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (196639715..196732806)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (197123662..197216860)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (197504439..197597525)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 Neighboring gene uncharacterized LOC105373821 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16909 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12204 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12205 Neighboring gene uncharacterized LOC105373823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16910 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16911 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:197504225-197504762 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:197504763-197505300 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:197517516-197518164 Neighboring gene small Cajal body-specific RNA 16 Neighboring gene uncharacterized LOC100130452 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16912 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16913 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16914 Neighboring gene general transcription factor IIIC subunit 3 Neighboring gene chromosome 2 open reading frame 66

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ10202, FLJ38811, FLJ39660, MGC72171, DKFZp434P055

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
coiled-coil domain-containing protein 150

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080539.2NP_001074008.1  coiled-coil domain-containing protein 150 isoform 1

    See identical proteins and their annotated locations for NP_001074008.1

    Status: VALIDATED

    Source sequence(s)
    AC068544
    Consensus CDS
    CCDS46478.1
    UniProtKB/Swiss-Prot
    Q6P5U6, Q6P663, Q8N8V5, Q8NCX0
    Related
    ENSP00000373827.4, ENST00000389175.9
    Conserved Domains (2) summary
    COG1196
    Location:192929
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl19219
    Location:412507
    DUF342; Protein of unknown function (DUF342)
  2. NM_001353339.2NP_001340268.1  coiled-coil domain-containing protein 150 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC068544, AK096979, AK302685
    UniProtKB/TrEMBL
    B4DZ03
    Conserved Domains (1) summary
    cl25732
    Location:2678
    SMC_N; RecF/RecN/SMC N terminal domain
  3. NM_001353340.2NP_001340269.2  coiled-coil domain-containing protein 150 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC068544
    Related
    ENSP00000387257.1, ENST00000409270.5
  4. NM_001412753.1NP_001399682.1  coiled-coil domain-containing protein 150 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC068544

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    196639715..196732806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006712438.4XP_006712501.1  coiled-coil domain-containing protein 150 isoform X1

    Conserved Domains (2) summary
    TIGR02168
    Location:3281010
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl19219
    Location:412507
    DUF342; Protein of unknown function (DUF342)
  2. XM_017003863.2XP_016859352.1  coiled-coil domain-containing protein 150 isoform X3

  3. XM_047443975.1XP_047299931.1  coiled-coil domain-containing protein 150 isoform X4

  4. XM_017003861.2XP_016859350.1  coiled-coil domain-containing protein 150 isoform X2

  5. XM_047443976.1XP_047299932.1  coiled-coil domain-containing protein 150 isoform X5

  6. XM_047443977.1XP_047299933.1  coiled-coil domain-containing protein 150 isoform X6

  7. XM_017003864.2XP_016859353.1  coiled-coil domain-containing protein 150 isoform X7

    Conserved Domains (1) summary
    TIGR02168
    Location:136775
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  8. XM_047443978.1XP_047299934.1  coiled-coil domain-containing protein 150 isoform X9

  9. XM_011510987.3XP_011509289.1  coiled-coil domain-containing protein 150 isoform X8

    See identical proteins and their annotated locations for XP_011509289.1

    UniProtKB/TrEMBL
    B4DZ03
    Conserved Domains (1) summary
    cl25732
    Location:2678
    SMC_N; RecF/RecN/SMC N terminal domain
  10. XM_017003866.2XP_016859355.1  coiled-coil domain-containing protein 150 isoform X8

    UniProtKB/TrEMBL
    B4DZ03
    Conserved Domains (1) summary
    cl25732
    Location:2678
    SMC_N; RecF/RecN/SMC N terminal domain
  11. XM_011510988.3XP_011509290.1  coiled-coil domain-containing protein 150 isoform X10

    Conserved Domains (2) summary
    pfam07851
    Location:352434
    TMPIT; TMPIT-like protein
    cl09914
    Location:248388
    PHA_synth_III_E; Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    197123662..197216860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054341467.1XP_054197442.1  coiled-coil domain-containing protein 150 isoform X1

  2. XM_054341469.1XP_054197444.1  coiled-coil domain-containing protein 150 isoform X3

  3. XM_054341470.1XP_054197445.1  coiled-coil domain-containing protein 150 isoform X4

  4. XM_054341468.1XP_054197443.1  coiled-coil domain-containing protein 150 isoform X2

  5. XM_054341473.1XP_054197448.1  coiled-coil domain-containing protein 150 isoform X7

  6. XM_054341476.1XP_054197451.1  coiled-coil domain-containing protein 150 isoform X9

  7. XM_054341471.1XP_054197446.1  coiled-coil domain-containing protein 150 isoform X5

  8. XM_054341472.1XP_054197447.1  coiled-coil domain-containing protein 150 isoform X6

  9. XM_054341475.1XP_054197450.1  coiled-coil domain-containing protein 150 isoform X8

    UniProtKB/TrEMBL
    B4DZ03
  10. XM_054341474.1XP_054197449.1  coiled-coil domain-containing protein 150 isoform X8

    UniProtKB/TrEMBL
    B4DZ03
  11. XM_054341477.1XP_054197452.1  coiled-coil domain-containing protein 150 isoform X10

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173466.1: Suppressed sequence

    Description
    NM_173466.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
  2. NM_173646.1: Suppressed sequence

    Description
    NM_173646.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.