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OrsajCp084 ORF56; 5' portion of ORF393 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 3131485, updated on 12-Jul-2024

Summary

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Gene symbol
OrsajCp084
Gene description
ORF56; 5' portion of ORF393
Locus tag
OrsajCp084
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Oryza sativa Japonica Group (cultivar: Nipponbare)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) Plastid (non-nuclear) NC_001320.1 (101229..101399)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) Plastid (non-nuclear) NC_001320.1 (101229..101399)

NC_001320.1Genomic Context describing neighboring genes Neighboring gene ORF63 Neighboring gene ribosomal protein S15 Neighboring gene NADH dehydrogenase subunit 5 Neighboring gene ORF63

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Hiratsuka J, et al. Mol Gen Genet, 1989 Jun. PMID 2770692
  2. A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae). Morton BR, et al. Curr Genet, 1993 Oct. PMID 8252646
  3. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  4. Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes. Shimada H, et al. Nucleic Acids Res, 1991 Mar 11. PMID 1708498, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Miscellaneous features

  • Loc: 101391-101392 [JSB]; Junction IR-SSC

General protein information

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Preferred Names
ORF56; 5' portion of ORF393
Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001320.1 Reference assembly

    Range
    101229..101399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_039440.1 hypothetical protein OrsajCp084 [Oryza sativa Japonica Group]

    See identical proteins and their annotated locations for NP_039440.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K0LKV6, A0A0N9DZU9, A0A0N9E0N9, A0A7S8BCZ0, E9KIS5, J7EXN4
    Conserved Domains (1) summary
    cl21493
    Location:1 → 54
    Complex1_49kDa; Respiratory-chain NADH dehydrogenase, 49 Kd subunit
Nucleotide Protein
Heading Accession and Version

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