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fbxo42 F-box protein 42 [ Danio rerio (zebrafish) ]

Gene ID: 335459, updated on 14-Nov-2024

Summary

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Official Symbol
fbxo42provided by ZNC
Official Full Name
F-box protein 42provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7399
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-7399
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:64224; wu:fj14e08
Summary
Orthologous to human FBXO42 (F-box protein 42). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: suggests misassembly
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See fbxo42 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (191635..225386, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (218606..241718, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene filamin binding LIM protein 1 Neighboring gene solute carrier family 25 member 34 Neighboring gene rootletin-like Neighboring gene olfactory receptor class A-like protein 1 Neighboring gene olfactory receptor class A related 1 Neighboring gene olfactory receptor class A related 2 Neighboring gene zgc:66156 Neighboring gene uncharacterized LOC137488988 Neighboring gene myosin heavy chain, fast skeletal muscle-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ubiquitin-like ligase-substrate adaptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
F-box only protein 42

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212739.1 → NP_997904.1  F-box only protein 42

    See identical proteins and their annotated locations for NP_997904.1

    Status: PROVISIONAL

    Source sequence(s)
    BC053311
    UniProtKB/TrEMBL
    Q7T302
    Conserved Domains (3) summary
    sd00038
    Location:88 → 137
    Kelch; KELCH repeat [structural motif]
    pfam12937
    Location:16 → 51
    F-box-like; F-box-like
    pfam13415
    Location:99 → 151
    Kelch_3; Galactose oxidase, central domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    191635..225386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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