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LOC4325064 F-box/LRR-repeat protein At1g67190 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325064, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4325064
Gene description
F-box/LRR-repeat protein At1g67190
Locus tag
OSNPB_010859600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0679C12.5
Expression
Ubiquitous expression in leaves after flowering (RPKM 19.8), roots after flowering (RPKM 19.5) and 6 other tissues See more
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Genomic context

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See LOC4325064 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37817454..37824714, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37190441..37197799, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YnbD Neighboring gene transcription factor LG2-like Neighboring gene uncharacterized LOC136355504 Neighboring gene large ribosomal subunit protein uL1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box/LRR-repeat protein At1g67190
Names
F-box domain and LRR containing protein
F-box protein-like
Os01g0859600
P0489B03.15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    37817454..37824714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766007.3 → XP_015621493.1  F-box/LRR-repeat protein At1g67190

    UniProtKB/TrEMBL
    A0A8J8XZS9, A2WX70, A2ZZS3, Q0JHJ5, Q8RZ32
    Conserved Domains (2) summary
    smart00256
    Location:4 → 39
    FBOX; A Receptor for Ubiquitination Targets
    sd00033
    Location:126 → 148
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_066305978.1 → XP_066162075.1  F-box/LRR-repeat protein At1g67190

    UniProtKB/TrEMBL
    A0A8J8XZS9, A2WX70, A2ZZS3, Q0JHJ5, Q8RZ32

  3. XM_015766005.3 → XP_015621491.1  F-box/LRR-repeat protein At1g67190

    UniProtKB/TrEMBL
    A0A8J8XZS9, A2WX70, A2ZZS3, Q0JHJ5, Q8RZ32
    Conserved Domains (2) summary
    smart00256
    Location:4 → 39
    FBOX; A Receptor for Ubiquitination Targets
    sd00033
    Location:126 → 148
    LRR_RI; leucine-rich repeat [structural motif]

  4. XM_015766006.3 → XP_015621492.1  F-box/LRR-repeat protein At1g67190

    UniProtKB/TrEMBL
    A0A8J8XZS9, A2WX70, A2ZZS3, Q0JHJ5, Q8RZ32
    Conserved Domains (2) summary
    smart00256
    Location:4 → 39
    FBOX; A Receptor for Ubiquitination Targets
    sd00033
    Location:126 → 148
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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