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LOC4325296 uncharacterized LOC4325296 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325296, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325296
Gene description
uncharacterized LOC4325296
Locus tag
OSNPB_010698100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1116_H09.32-1; OJ1116_H09.32-2
Expression
Ubiquitous expression in roots after flowering (RPKM 26.8), flowers (RPKM 21.2) and 6 other tissues See more
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Genomic context

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See LOC4325296 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29473616..29479016)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28885412..28890848)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 88B1 Neighboring gene uncharacterized LOC4325295 Neighboring gene small nucleolar RNA snoR101 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10-like Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4325296
Names
Os01g0698100
gene suppressor-of-white-apricot protein-like
protein SWAP

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    29473616..29479016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764456.3 → XP_015619942.1  uncharacterized protein LOC4325296

    UniProtKB/TrEMBL
    A0A0P0V6Y4, A0A5S6RDG1, A2WU48, Q0JK41, Q5N8K0
    Conserved Domains (3) summary
    smart00648
    Location:158 → 210
    SWAP; Suppressor-of-White-APricot splicing regulator
    pfam08648
    Location:709 → 815
    DUF1777; Protein of unknown function (DUF1777)
    pfam09750
    Location:3 → 123
    DRY_EERY; Alternative splicing regulator
Nucleotide Protein
Heading Accession and Version

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