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LOC4328423 cullin-associated NEDD8-dissociated protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328423, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4328423
Gene description
cullin-associated NEDD8-dissociated protein 1
Locus tag
OSNPB_020167700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 34.4), flowers (RPKM 29.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3668369..3678394, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3659305..3669323, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355130 Neighboring gene auxin-responsive protein SAUR71 Neighboring gene urease accessory protein F Neighboring gene 4-hydroxyphenylpyruvate dioxygenase Neighboring gene transcription factor HHO5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in SCF complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cullin-associated NEDD8-dissociated protein 1
Names
OSJNBa0085K21.46
Os02g0167700
putative TIP120 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    3668369..3678394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066307778.1 → XP_066163875.1  cullin-associated NEDD8-dissociated protein 1

    UniProtKB/TrEMBL
    B8AIH4, B9F386, Q6H4V4

  2. XM_015770893.3 → XP_015626379.1  cullin-associated NEDD8-dissociated protein 1

    UniProtKB/TrEMBL
    B8AIH4, B9F386, Q6H4V4
    Conserved Domains (3) summary
    sd00044
    Location:810 → 837
    HEAT; HEAT repeat [structural motif]
    pfam08623
    Location:1052 → 1202
    TIP120; TATA-binding protein interacting (TIP20)
    pfam13646
    Location:928 → 1030
    HEAT_2; HEAT repeats
Nucleotide Protein
Heading Accession and Version

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