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LOC4341646 uncharacterized LOC4341646 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341646, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4341646
Gene description
uncharacterized LOC4341646
Locus tag
OSNPB_060644300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 11.4), leaves before flowering (RPKM 9.6) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27143236..27157247)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26279746..26293442)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit 7 homolog Neighboring gene pyrophosphate-energized vacuolar membrane proton pump Neighboring gene protein S-acyltransferase 24 Neighboring gene U3 small nucleolar RNA-associated protein 21 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to fungus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4341646
Names
L-zip+NBS+LRR-like protein
Os06g0644300
Os06g0644466
P0017B12.10
P0017B12.13
putative NBS-LRR disease resistance protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    27143236..27157247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787728.3 → XP_015643214.1  uncharacterized protein LOC4341646

    UniProtKB/TrEMBL
    B9FQ62, Q0DAM4
    Conserved Domains (3) summary
    cd14798
    Location:35 → 131
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:566 → 588
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00931
    Location:163 → 446
    NB-ARC; NB-ARC domain
Nucleotide Protein
Heading Accession and Version

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