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LOC4347497 leucine--tRNA ligase, cytoplasmic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347497, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4347497
Gene description
leucine--tRNA ligase, cytoplasmic
Locus tag
OSNPB_090503400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4347497 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23883225..23887884)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19472456..19477140)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene chloroplast envelope quinone oxidoreductase homolog Neighboring gene chloroplast envelope quinone oxidoreductase homolog Neighboring gene uncharacterized LOC4347498 Neighboring gene putative F-box/LRR-repeat protein At3g59160

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables leucine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in leucyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine--tRNA ligase, cytoplasmic
Names
Os09g0503400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    23883225..23887884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756345.3 → XP_015611831.1  leucine--tRNA ligase, cytoplasmic

    UniProtKB/TrEMBL
    A0A0P0XP69, A3C0D8, Q0J0N6
    Conserved Domains (1) summary
    PLN02959
    Location:3 → 1086
    PLN02959; aminoacyl-tRNA ligase
Nucleotide Protein
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